Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0431 ATGACGAATTTACCCTCTCCGGCCGTCGCCGTCACTGTCCTCACCCTCATCGCCGTCGTTTTCCCGTTGTTCCCGGCGATCCAAGCTCTCGGTTCAGCCTCAACCCTCGCCGTCAGCTACAGCTCCGGAACCGTCTGTGGCATCGTCGCGGAGCAGCCGACCCAAAGGATTTTGTGTTTCCGTGACGGTCAAACCATTTTTATTGAACCCCATATCTCCTTCTCCGCCGTATCCGGCGGCCGGAATACCTTCTGCGGTATAAGGTCCGGCGGTTACACCCTCCTCTGCTGGGACTTCGACTCGACCACCGCTACGTTTTCCCGGAGAAGACTTTACTACAGCCCCACCGTTCTTCTGGAGAATCTCGCGGTCGGCGACGAGCAAATCTGCGCCACGTTGGTTGGCGCCGGCAATGTAACTTGCTGGCGAGAAGGTAACAACGCGAGTGTTGGATTTTCTTCTCTTCAATATGATTCAATCTCTTCTGGGTATGGGTTTTCTTGTGGGATTTTGAAAGGGAGTCAATCCATCCGATGTTGGGGTAGAAATTCGTCGATTGCAACCGTAATTGAAAATGGGTTTCGAAATATTTCAATGTTGAGCATCGTGGCCGGTGGGTTTCATGCCTGTGGATTGAATTCCTCTGGTGGGTTGCTTTGTAAAGGGAATAACGATTTTGGGCAGTTGGATTTTCCTTCAAATACATCCATGGGGTTCTCTGAATTAGCACTCGGTGAACGCCATAGCTGTGGGATTTTAGTCTCGAATGGATCAGTGGTTTGTTGGGGCGGCTTGGGATTTTCTGTTGATTCGATTCGAGAAACTTCTTTTGAGTTAATTTCTTCAGGATCTGATTTTGTTTGTGGTTTAACGACGAGTAATTTCTCTGTTCTTTGTTGGGGGCCTGGTTGGTCCAATGATTCTTTCGGTCTTTCTTCACTTTCTCTTCCCAAGATTCTTCCTGGTCCTTGTGTTCAATCTTCTTGTAGTGATTGTGGGGTTTATCCTTTATCTCAAACCCTCTGTTCTAATTCTGGGAATGTCTGTAATCGCTGTTTGTTTACTGCTTCAACGCTGCCACCGCCTCTGCCATCGTCTCCTCCTCCGCAGCGGTTGCCACCGCCAACGGTGAAGGCCGCGTCACCTCCGCCGGCTGCCTTGAGAAAGGGTTTGTTGGCATTTGGTATTGTGGGCTCAGTTGGTGCCTTTGCTGGGATTTGCACTATTGTTTACTGCTTGTGGACTGGTGCTTGTTTTGGGCATAAGAAGATACATAACTCTGTTCAGCCTACCATCACTAGAGCTGCTAGTTCGAATGGTGGAACGACGACTTCAAACACAAACAACAGCCCTCCATCTCGGTCGTTGACGATACGACGTCAAGGCTCACGGATAATGCGAAGGCAGAGGAGTGGCACCTCATCTAAGCATGCCGATAGAGCAGAAGAATTCACTCTAGCAGAGCTTGCTATGGCTACCAATGATTTCTCTCCTGAGAACAAGATTGGTGAGGGGAGCTTCGGCGTCGTGTACCGAGGGAAACTGTACGATGGCCGGGAAGTTGCGATTAAGAGAGGCGAAACAGGGCCGAAAACTAAGAAGTTTCAGGAGAAAGAGAGTGCTTTTGATTCAGAATTGGCATTCTTGTCTAGGCTTCATCACAAGCATTTGGTTAGGCTTGTTGGGTATTGTGAGGAGAAAGATGAGAGACTGTTGGTTTATGAGTATATGAAAAATGGTGCACTTTATAATCATCTTCATGACAAGAACAATTTTGAGAAAGCCAGCAGTGTTATAAACTCTTGGAAAATGAGGATCAAAATTGCTTTAGATGCAGCTAGAGGGATTGAATATCTTCACAACTATGCAGTCCCTCCCATAATCCATAGAGATATCAAATCATCCAACATACTCCTCGACGCGAATTGGACGGCGAGAGTATCTGACTTCGGGTTGTCATTGATGAGTCCAGGGTCGGACCGTGACTACCAACCAACAAAGGCAGCTGGGACGGTTGGTTACATTGATCCTGAGTACTATGGACTGAATGTTTTGACTGCTAAGAGTGATGTGTATGGGCTTGGGGTGGTGTTGTTGGAGCTTTTGACAGGGAAGAGAGCTATATTTAAGGATGATGAACAAGGAGGGACACCGGTCAGCGTGGTCGATTATGCGGTGCCTGTGATTATGGTTGGAGAATTGGTGAAGATTTTGGATCAGAGAGTTGGGCCACCACAGATGAACGAAGCGGAGGCGGTGGAGCTGGTGGCTTACACAGCAATGCATAGTGTGCATTTGGAAGGGAAAGATCGGCCGACAATGACCGACATTGTTGCTAATTTGGAACGAGCTTTGAATCTTTGTGATGATAGCTATGGTAGCATCTCTAGTGGTGGCATTTCCATTGTTTCAGAGTGA 2418 47.97 MTNLPSPAVAVTVLTLIAVVFPLFPAIQALGSASTLAVSYSSGTVCGIVAEQPTQRILCFRDGQTIFIEPHISFSAVSGGRNTFCGIRSGGYTLLCWDFDSTTATFSRRRLYYSPTVLLENLAVGDEQICATLVGAGNVTCWREGNNASVGFSSLQYDSISSGYGFSCGILKGSQSIRCWGRNSSIATVIENGFRNISMLSIVAGGFHACGLNSSGGLLCKGNNDFGQLDFPSNTSMGFSELALGERHSCGILVSNGSVVCWGGLGFSVDSIRETSFELISSGSDFVCGLTTSNFSVLCWGPGWSNDSFGLSSLSLPKILPGPCVQSSCSDCGVYPLSQTLCSNSGNVCNRCLFTASTLPPPLPSSPPPQRLPPPTVKAASPPPAALRKGLLAFGIVGSVGAFAGICTIVYCLWTGACFGHKKIHNSVQPTITRAASSNGGTTTSNTNNSPPSRSLTIRRQGSRIMRRQRSGTSSKHADRAEEFTLAELAMATNDFSPENKIGEGSFGVVYRGKLYDGREVAIKRGETGPKTKKFQEKESAFDSELAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYNHLHDKNNFEKASSVINSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMSPGSDRDYQPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDDEQGGTPVSVVDYAVPVIMVGELVKILDQRVGPPQMNEAEAVELVAYTAMHSVHLEGKDRPTMTDIVANLERALNLCDDSYGSISSGGISIVSE 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4856256 4858673 - CcPI632755_07g004310.1 Cco07g0431 183084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0431 805 ProSiteProfiles Protein kinase domain profile. 496 785 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0431 805 Pfam Protein kinase domain 498 778 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0431 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0431 805 MobiDBLite consensus disorder prediction 435 460 - -
Cco07g0431 805 SMART serkin_6 496 785 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0431 805 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 33 794 IPR044815 GO:0004674(InterPro)
Cco07g0431 805 FunFam Serine/threonine-protein kinase-like protein CCR4 577 797 - -
Cco07g0431 805 FunFam serine/threonine-protein kinase-like protein CCR1 465 576 - -
Cco07g0431 805 Gene3D - 73 315 IPR009091 -
Cco07g0431 805 Pfam Regulator of chromosome condensation (RCC1) repeat 201 228 - -
Cco07g0431 805 Gene3D Phosphorylase Kinase; domain 1 458 576 - -
Cco07g0431 805 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524(InterPro)
Cco07g0431 805 SUPERFAMILY Protein kinase-like (PK-like) 477 781 IPR011009 -
Cco07g0431 805 Gene3D Transferase(Phosphotransferase) domain 1 577 793 - -
Cco07g0431 805 SUPERFAMILY RCC1/BLIP-II 65 263 IPR009091 -
Cco07g0431 805 MobiDBLite consensus disorder prediction 435 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0076 Cco-Chr3:788883 Cco07g0431 Cco-Chr7:4856256 1.20E-182 dispersed
Cco07g0431 Cco-Chr7:4856256 Cco08g0337 Cco-Chr8:6629201 1.20E-100 dispersed
Cco07g0431 Cco-Chr7:4856256 Cco05g2886 Cco-Chr5:36430439 7.10E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86959 PF00069 Pkinase 1.30E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0431 - - - 0.0