Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0433 ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGACGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAACCCGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGGTCCGTTTTACCTGAGTTTGATCTCTTATTCTGTTGTGGTATACTGTCAGTTCGGAAAGTGGAAAAGTCCAAAGTCTTCTATCAGATTGAGGAATTTTCACTTGCTTCTTGTGCTTCTTCCCCCTTGAATATCTCTTGTGACCTTTTACTTTTGGAATCATCTCCTGAAGGCTGCTTCTCAAATGAAAATTTCAAGTTTTACTATCATCATGCTGATATCTATGAATCAAGAATAACCTGGAATCAGCATAAGTGGAACGAGAAGGGAAGAAAGTTCCAAGATGCTGTGATACAACTTCCCCGGTGGTTAATCTCTGATATGGTTGTGAAGAATAGTGAAGGGCATAACATTTTGGCTCTTGTTTATAGGAGTTGGCCAAGCAAGGCAATTCAACTGCCTAACTCCCAGATGAATAGACCTCTTCTCAATCCTAGGTCCCAGGATGAAAGAGTTCACATTAAAAACTCCTCCTCTATGGAGATTCAGATCCTCCCTATTGGTTGTGGGAGCAAGGGAGCTGATTACAAGTACCTGCCCACTAGATTTCTCTATCCAGCAAGCTTAAGCACAAAACTTCAACACCAAAAATCCTTGTCCGACACCAACCATGTTGTGAAATTTGAAGTCTTCATCAAGGTCCCTGTGATGACCATGGCTGAATGTAGGCAAGGATTCGTTGGAACACTTTTGTTTAGTGGGAAGCGCCTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAATCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTCGAAACAGCAATCCGAAGCTACTCGAAGAGAGTTATGGAGAGGACGAAGATGAGCACGGTGATACGCTCTGTGGGAGCTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGGAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGGGGAAGACCGTAG 1425 44.98 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERSVLPEFDLLFCCGILSVRKVEKSKVFYQIEEFSLASCASSPLNISCDLLLLESSPEGCFSNENFKFYYHHADIYESRITWNQHKWNEKGRKFQDAVIQLPRWLISDMVVKNSEGHNILALVYRSWPSKAIQLPNSQMNRPLLNPRSQDERVHIKNSSSMEIQILPIGCGSKGADYKYLPTRFLYPASLSTKLQHQKSLSDTNHVVKFEVFIKVPVMTMAECRQGFVGTLLFSGKRLFSMINDLPTLFEVASGRKSVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4899648 4912409 + CcPI632755_07g004330.1 Cco07g0433 183086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0433 474 ProSiteProfiles Zinc finger PHD-type profile. 418 470 IPR019787 -
Cco07g0433 474 Pfam Alfin 10 120 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cco07g0433 474 Pfam PHD-finger 421 467 IPR019787 -
Cco07g0433 474 ProSitePatterns Zinc finger PHD-type signature. 421 467 IPR019786 -
Cco07g0433 474 SMART PHD_3 420 468 IPR001965 -
Cco07g0433 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 469 IPR013083 -
Cco07g0433 474 SUPERFAMILY FYVE/PHD zinc finger 409 471 IPR011011 -
Cco07g0433 474 CDD PHD_AL_plant 420 470 IPR044104 -
Cco07g0433 474 PANTHER CPG BINDING PROTEIN 7 120 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cco07g0433 474 MobiDBLite consensus disorder prediction 372 402 - -
Cco07g0433 474 MobiDBLite consensus disorder prediction 382 402 - -
Cco07g0433 474 FunFam PHD finger alfin-like protein 413 469 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0433 K26274 - - csv:101211934 258.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0433 Cco-Chr7:4899648 Cco09g0081 Cco-Chr9:735488 9.00E-64 dispersed
Cco10g2197 Cco-Chr10:35034041 Cco07g0433 Cco-Chr7:4899648 1.20E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g55 . Blo13g00799 . . . Bpe15g01161 . . Cmo04g00150 Cmo04g01181 Cma04g01114 Cma04g00152 Car04g00146 . . . Cpe01g00130 . . . . . . . Cla07g00398 Cam07g0425 Cec07g0477 Cco07g0433 Clacu07g0425 Cmu07g0469 Cre07g0775 . . . . . . Chy10g00423 Cme10g01083 . Blo04g00232 Bda14g00249 . . . . . . . . . . . . Cpe01g01035 . . . . . . . . . . . . . . . . Csa05g00818 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0716 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.9e-114 407.9
Cco11g0181 . 9 248 Alfin-like Transcription Factor Family AT1G14510 70.9 2.6e-94 342.0
Cco09g0081 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.1 7.1e-92 334.0
Cco08g1144 . 9 225 Alfin-like Transcription Factor Family AT1G14510 69.6 2.3e-82 302.4
Cco10g2197 . 1 237 Alfin-like Transcription Factor Family AT1G14510 57.5 8.2e-80 293.9
Cco11g0181 . 1 250 Alfin-like Transcription Factor Family AT5G26210 77.2 8.2e-112 400.2
Cco09g0081 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 8.8e-98 353.6
Cco10g0716 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.7e-94 342.0
Cco08g1144 . 1 225 Alfin-like Transcription Factor Family AT5G26210 70.9 2.1e-91 332.4
Cco10g2197 . 1 239 Alfin-like Transcription Factor Family AT5G26210 57.1 7.0e-79 290.8
Cco11g0181 . 1 250 Alfin-like Transcription Factor Family AT3G42790 71.3 4.9e-101 364.4
Cco09g0081 . 1 250 Alfin-like Transcription Factor Family AT3G42790 63.7 6.2e-96 347.4
Cco10g0716 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 6.0e-91 330.9
Cco08g1144 . 1 225 Alfin-like Transcription Factor Family AT3G42790 66.5 4.6e-83 304.7
Cco10g2197 . 9 239 Alfin-like Transcription Factor Family AT3G42790 58.3 1.2e-78 290.0
Cco10g2197 . 6 240 Alfin-like Transcription Factor Family AT5G05610 75.1 3.0e-103 371.7
Cco11g0181 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.2e-92 334.3
Cco09g0081 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 2.2e-90 328.9
Cco10g0716 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.1e-84 308.5
Cco08g1144 . 8 225 Alfin-like Transcription Factor Family AT5G05610 65.6 6.0e-80 294.3
Cco10g2197 . 44 240 Alfin-like Transcription Factor Family AT3G11200 74.8 7.8e-85 310.5
Cco11g0181 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 3.6e-74 275.0
Cco09g0081 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.2 1.1e-73 273.5
Cco10g0716 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.1e-70 260.8
Cco08g1144 . 44 225 Alfin-like Transcription Factor Family AT3G11200 64.8 1.7e-63 239.6
Cco10g0716 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Cco11g0181 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 6.8e-66 247.7
Cco08g1144 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.2 1.3e-64 243.4
Cco09g0081 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.2e-63 238.8
Cco10g2197 . 1 156 Alfin-like Transcription Factor Family AT2G02470 65.4 4.6e-54 208.4
Cco07g0433 . 8 120 Alfin-like Transcription Factor Family AT2G02470 70.4 1.6e-43 173.3
Cco08g1144 . 1 167 Alfin-like Transcription Factor Family AT5G20510 76.8 7.3e-73 270.4
Cco11g0181 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 6.9e-71 263.8
Cco09g0081 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 3.2e-68 255.0
Cco10g0716 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.8e-67 250.4
Cco10g2197 . 8 158 Alfin-like Transcription Factor Family AT5G20510 61.8 3.5e-51 198.4
Cco07g0433 . 7 111 Alfin-like Transcription Factor Family AT5G20510 72.4 2.1e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59609 PF12165 Alfin 3.00E-58 No_clan Cco TF