Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0433 | ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGACGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAACCCGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGGTCCGTTTTACCTGAGTTTGATCTCTTATTCTGTTGTGGTATACTGTCAGTTCGGAAAGTGGAAAAGTCCAAAGTCTTCTATCAGATTGAGGAATTTTCACTTGCTTCTTGTGCTTCTTCCCCCTTGAATATCTCTTGTGACCTTTTACTTTTGGAATCATCTCCTGAAGGCTGCTTCTCAAATGAAAATTTCAAGTTTTACTATCATCATGCTGATATCTATGAATCAAGAATAACCTGGAATCAGCATAAGTGGAACGAGAAGGGAAGAAAGTTCCAAGATGCTGTGATACAACTTCCCCGGTGGTTAATCTCTGATATGGTTGTGAAGAATAGTGAAGGGCATAACATTTTGGCTCTTGTTTATAGGAGTTGGCCAAGCAAGGCAATTCAACTGCCTAACTCCCAGATGAATAGACCTCTTCTCAATCCTAGGTCCCAGGATGAAAGAGTTCACATTAAAAACTCCTCCTCTATGGAGATTCAGATCCTCCCTATTGGTTGTGGGAGCAAGGGAGCTGATTACAAGTACCTGCCCACTAGATTTCTCTATCCAGCAAGCTTAAGCACAAAACTTCAACACCAAAAATCCTTGTCCGACACCAACCATGTTGTGAAATTTGAAGTCTTCATCAAGGTCCCTGTGATGACCATGGCTGAATGTAGGCAAGGATTCGTTGGAACACTTTTGTTTAGTGGGAAGCGCCTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAATCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTCGAAACAGCAATCCGAAGCTACTCGAAGAGAGTTATGGAGAGGACGAAGATGAGCACGGTGATACGCTCTGTGGGAGCTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGGAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGGGGAAGACCGTAG | 1425 | 44.98 | MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERSVLPEFDLLFCCGILSVRKVEKSKVFYQIEEFSLASCASSPLNISCDLLLLESSPEGCFSNENFKFYYHHADIYESRITWNQHKWNEKGRKFQDAVIQLPRWLISDMVVKNSEGHNILALVYRSWPSKAIQLPNSQMNRPLLNPRSQDERVHIKNSSSMEIQILPIGCGSKGADYKYLPTRFLYPASLSTKLQHQKSLSDTNHVVKFEVFIKVPVMTMAECRQGFVGTLLFSGKRLFSMINDLPTLFEVASGRKSVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP | 474 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4899648 | 4912409 | + | CcPI632755_07g004330.1 | Cco07g0433 | 183086 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0433 | 474 | ProSiteProfiles | Zinc finger PHD-type profile. | 418 | 470 | IPR019787 | - | |
Cco07g0433 | 474 | Pfam | Alfin | 10 | 120 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cco07g0433 | 474 | Pfam | PHD-finger | 421 | 467 | IPR019787 | - | |
Cco07g0433 | 474 | ProSitePatterns | Zinc finger PHD-type signature. | 421 | 467 | IPR019786 | - | |
Cco07g0433 | 474 | SMART | PHD_3 | 420 | 468 | IPR001965 | - | |
Cco07g0433 | 474 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 410 | 469 | IPR013083 | - | |
Cco07g0433 | 474 | SUPERFAMILY | FYVE/PHD zinc finger | 409 | 471 | IPR011011 | - | |
Cco07g0433 | 474 | CDD | PHD_AL_plant | 420 | 470 | IPR044104 | - | |
Cco07g0433 | 474 | PANTHER | CPG BINDING PROTEIN | 7 | 120 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cco07g0433 | 474 | MobiDBLite | consensus disorder prediction | 372 | 402 | - | - | |
Cco07g0433 | 474 | MobiDBLite | consensus disorder prediction | 382 | 402 | - | - | |
Cco07g0433 | 474 | FunFam | PHD finger alfin-like protein | 413 | 469 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0433 | Cco-Chr7:4899648 | Cco09g0081 | Cco-Chr9:735488 | 9.00E-64 | dispersed | |
Cco10g2197 | Cco-Chr10:35034041 | Cco07g0433 | Cco-Chr7:4899648 | 1.20E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59609 | PF12165 | Alfin | 3.00E-58 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0433 | K26274 | - | csv:101211934 | 258.455 |