Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0433 ATGGCTTCAATCTCTTCCAGCCCTCGTTCCGTTGAAGACATCTTCAAGGATTACAACGCTCGACGCACAGGCCTTGTGCGAGCCCTCACTTATGATGTCGACGAGTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTATGGACATCCGAATGAGTCTTGGGAGGTGACTCTGCCTGCCGAGGAAGTTCCATCCGAGCTCCCTGAACCCGCGTTGGGGATCAATTTTGCAAGAGATGGGATGAAGCGTAGAGACTGGCTTTCGTTGGTGGCTGTGCACAGCGATTGTTGGTTGCTTTCAGTGGCGTTCTATTTTGGTGCTCAACTCAACCGTAATGAGCGGTCCGTTTTACCTGAGTTTGATCTCTTATTCTGTTGTGGTATACTGTCAGTTCGGAAAGTGGAAAAGTCCAAAGTCTTCTATCAGATTGAGGAATTTTCACTTGCTTCTTGTGCTTCTTCCCCCTTGAATATCTCTTGTGACCTTTTACTTTTGGAATCATCTCCTGAAGGCTGCTTCTCAAATGAAAATTTCAAGTTTTACTATCATCATGCTGATATCTATGAATCAAGAATAACCTGGAATCAGCATAAGTGGAACGAGAAGGGAAGAAAGTTCCAAGATGCTGTGATACAACTTCCCCGGTGGTTAATCTCTGATATGGTTGTGAAGAATAGTGAAGGGCATAACATTTTGGCTCTTGTTTATAGGAGTTGGCCAAGCAAGGCAATTCAACTGCCTAACTCCCAGATGAATAGACCTCTTCTCAATCCTAGGTCCCAGGATGAAAGAGTTCACATTAAAAACTCCTCCTCTATGGAGATTCAGATCCTCCCTATTGGTTGTGGGAGCAAGGGAGCTGATTACAAGTACCTGCCCACTAGATTTCTCTATCCAGCAAGCTTAAGCACAAAACTTCAACACCAAAAATCCTTGTCCGACACCAACCATGTTGTGAAATTTGAAGTCTTCATCAAGGTCCCTGTGATGACCATGGCTGAATGTAGGCAAGGATTCGTTGGAACACTTTTGTTTAGTGGGAAGCGCCTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAATCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTCGAAACAGCAATCCGAAGCTACTCGAAGAGAGTTATGGAGAGGACGAAGATGAGCACGGTGATACGCTCTGTGGGAGCTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGGAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGGGGAAGACCGTAG 1425 44.98 MASISSSPRSVEDIFKDYNARRTGLVRALTYDVDEFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYFGAQLNRNERSVLPEFDLLFCCGILSVRKVEKSKVFYQIEEFSLASCASSPLNISCDLLLLESSPEGCFSNENFKFYYHHADIYESRITWNQHKWNEKGRKFQDAVIQLPRWLISDMVVKNSEGHNILALVYRSWPSKAIQLPNSQMNRPLLNPRSQDERVHIKNSSSMEIQILPIGCGSKGADYKYLPTRFLYPASLSTKLQHQKSLSDTNHVVKFEVFIKVPVMTMAECRQGFVGTLLFSGKRLFSMINDLPTLFEVASGRKSVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4899648 4912409 + CcPI632755_07g004330.1 Cco07g0433 183086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0433 474 ProSiteProfiles Zinc finger PHD-type profile. 418 470 IPR019787 -
Cco07g0433 474 Pfam Alfin 10 120 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cco07g0433 474 Pfam PHD-finger 421 467 IPR019787 -
Cco07g0433 474 ProSitePatterns Zinc finger PHD-type signature. 421 467 IPR019786 -
Cco07g0433 474 SMART PHD_3 420 468 IPR001965 -
Cco07g0433 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 469 IPR013083 -
Cco07g0433 474 SUPERFAMILY FYVE/PHD zinc finger 409 471 IPR011011 -
Cco07g0433 474 CDD PHD_AL_plant 420 470 IPR044104 -
Cco07g0433 474 PANTHER CPG BINDING PROTEIN 7 120 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cco07g0433 474 MobiDBLite consensus disorder prediction 372 402 - -
Cco07g0433 474 MobiDBLite consensus disorder prediction 382 402 - -
Cco07g0433 474 FunFam PHD finger alfin-like protein 413 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0433 Cco-Chr7:4899648 Cco09g0081 Cco-Chr9:735488 9.00E-64 dispersed
Cco10g2197 Cco-Chr10:35034041 Cco07g0433 Cco-Chr7:4899648 1.20E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59609 PF12165 Alfin 3.00E-58 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0433 K26274 - csv:101211934 258.455