Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0446 ATGTGCAGTGGCTCTAAGAAAAAAGTTGCTTCCTCGAATTCCGCCATGGAAGCTAGGTTTCTGAAGCTTAGCGAGGGGGCTTTGTTCTCCGCGAATTCAATCTTGCTTGAACTATCAGCCTCTGATGATGTAGAAGGGTTCAAGAGAGAGGTGGAAGAAAAGGATTTGGATGTTGATGAGCCAAGCTGCTGGTATGGAAGAGGAATTGGGTCAAAGAAGATGGGTTTTGAAGAAAGAACTCCGTTGATGATTGCTGCCATGTTCGGAAGCTCCAAGGTTGTCAAGTACTTAATTGAGACGGGCAAAGTTGATGTCAACAGGGCTTGTGGTTCAGATTTGACCACTGCCCTTCACTGTGCCACTGCTGGTGGCTCTTGTTCTTCCATTGAGACCATCAAGCTCTTGCTAGATGGATCTGCTGACGTCGATTGTGTCGATGCCTATGGGAGAAAACCTGTCGATTTGATTGTTTCAGCTTGCAGGATTGTGCTCAATTCGGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTACGGCTGGGGAAGGTGATCTGAGTCTTTACCTTGAAGAAGACCAGCAGAAGATCACAGCTTCCCAATCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCAGTTGATGTATCGCTGCCCGACATCAACAGCGGGATATACGGTACCGATGATTTCAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCATATTCACACGATTGGACCGAGTGCCCTTTTGTTCATCCTGGCGAGAACGCTAGGCGTAGAGACCCCAGGAAGTACCCGTATAGTTGCGTCCCGTGCCCTGAATTCCGGAAGGGGGCTTGCCCAAAGGGAGATTCCTGTGAGTATGCACATGGTGTTTTTGAGTCTTGGCTCCACCCTGCTCAATACCGAACCCGGCTCTGTAAGGATGAGACTGGCTGCACAAGAAAAGTCTGCTTCTTTGCTCACAAACCTGATGAGTTGCGCCCTGTGTATGCATCAACAGGCTCAGGCATGCCCTCACCTAGGTCTCTTTCGAGCAGTGCTGCAGATATGTCTACCATGAGCCCGCTTGTTCTTGGTTCATCATCGTTGTCCTTGCCGACTACCTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCGAAAAATGGGAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAGCTCCCTGGTAGCCGGTTAAAGGCCACCTTGAGCGCAAGAGATTTGGATCTGGAGATGGAATTGCTCGGGATAGATAAGAACACGAGCCAATTACAACATCAACAACAGTTGATCGACGAGATAGCCCGGCTCTCCTCTCCTTCTTACTGGAGTGCAGATGTAAGCAGGAGTGCAGAGTTGAAGCCAGCAAACCTCGATGACATGTTTGGATCATTAGATTCTTCCTTATTGTCTCAGTTGCAAGGCACCTCGCTAAAGACGCCAATCTCATCTCAAGTTCAATCTCCAACTGGGCTGCAGATGCGCCAAAACATCAACCAACTCCGTGCAAGTTACCCAGCTAACCTATCTTCCTCACCTGTAAAGAAACCCACTTCTTTTGGCTTTGACTCATCAAGTGCAGTGGCAGCCGCAGTGATGAACTCAAGGTCCGCTGCCTTTGCTAAACGAAGCCAGAGTTTCATCGATCGAGCTGCAGTGACTCGTCTTCCTGGGTTTACCGGAGCTGCAAATTCTGCAGCTACAATGTCTTCCCATCTCTCTGATTGGAACTCGCCTGATGGCAAACTAGACTGGGGAGTGCATGGCAACGATCTCAACAAACTCAAGAAATCTGCTTCGTTTGGGATCCGAAACAACGGCATCGGAACTCCCACATTTGCTCCACCAGTAGAGGAGCCTGATGTCTCTTGGGTTAACTCCTTGGTCAAAGACGTTCCATCGGAAAGCTTCGGGCTGTTCGGTGCTGAGAAGCGTCCATACAGCCTCAAAAGAGAAATCAACGAGATGCTCCCGTCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2061 49.15 MCSGSKKKVASSNSAMEARFLKLSEGALFSANSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMGFEERTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDLTTALHCATAGGSCSSIETIKLLLDGSADVDCVDAYGRKPVDLIVSACRIVLNSGRKAMEMLLRGDGTAGEGDLSLYLEEDQQKITASQSAKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSSAADMSTMSPLVLGSSSLSLPTTSTPPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGIDKNTSQLQHQQQLIDEIARLSSPSYWSADVSRSAELKPANLDDMFGSLDSSLLSQLQGTSLKTPISSQVQSPTGLQMRQNINQLRASYPANLSSSPVKKPTSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVTRLPGFTGAANSAATMSSHLSDWNSPDGKLDWGVHGNDLNKLKKSASFGIRNNGIGTPTFAPPVEEPDVSWVNSLVKDVPSESFGLFGAEKRPYSLKREINEMLPSWMEQQLYAEQEQIVA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5218054 5220114 + CcPI632755_07g004460.1 Cco07g0446 183099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0446 686 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515(InterPro)
Cco07g0446 686 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872(InterPro)
Cco07g0446 686 Pfam Ankyrin repeats (3 copies) 77 144 IPR002110 GO:0005515(InterPro)
Cco07g0446 686 Gene3D - 30 172 IPR036770 -
Cco07g0446 686 PANTHER UNKEMPT FAMILY MEMBER 74 643 IPR045234 -
Cco07g0446 686 ProSiteProfiles Ankyrin repeat region circular profile. 77 101 - -
Cco07g0446 686 SMART ANK_2a 112 144 IPR002110 GO:0005515(InterPro)
Cco07g0446 686 SMART ANK_2a 77 107 IPR002110 GO:0005515(InterPro)
Cco07g0446 686 Gene3D - 271 333 - -
Cco07g0446 686 SUPERFAMILY Ankyrin repeat 68 158 IPR036770 -
Cco07g0446 686 SMART c3hfinal6 270 296 IPR000571 GO:0046872(InterPro)
Cco07g0446 686 SMART c3hfinal6 305 328 IPR000571 GO:0046872(InterPro)
Cco07g0446 686 ProSiteProfiles Ankyrin repeat profile. 77 101 IPR002110 GO:0005515(InterPro)
Cco07g0446 686 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Cco07g0446 686 MobiDBLite consensus disorder prediction 334 355 - -
Cco07g0446 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 295 IPR000571 GO:0046872(InterPro)
Cco07g0446 686 MobiDBLite consensus disorder prediction 340 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0446 Cco-Chr7:5218054 Cco10g1692 Cco-Chr10:30465501 2.50E-131 dispersed
Cco02g2086 Cco-Chr2:33755065 Cco07g0446 Cco-Chr7:5218054 1.30E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59610 PF12796 Ank_2 2.90E-09 CL0465 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0446 - - - 0.0