Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco07g0453 | ATGTTCGCAGTTGCAGTGCCGAAGACGACGATGACTCCGTTATTCTCATCTCCAAAGCTCCCTTCACTACTCTACAAGTCCTCCTCTCTCAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCCGAGATCGTTGTCCAGTCCGAGGAACCTTCATGTTTCTGCGTCGTCGCCGTCGTCTGTTGATACGGTTTTGAAGAGGAAGAGGCCGGCGAGAATCGACGTGCCGCCGAGTATGCCGTCGATTGGATTTGAATTTGGAATATTCGAGACGCCGGAGGTGATGGAGGAGGAAGGAGAAGGATATTCTGTTTATTGTAAAAGAGGAAGAAGACGGATCAGCGCTATGGAGGATCGATTCTCAGCTACCGTCGGAATTCAAGGAGATTCTCGCCAGGCTTTCTTCGGAGTTTTCGACGGACACGGCGGAGCAGAAGTGGCGGAAATCGCAGCGAAAAGAATGAGCGAGAATGTAATCGATCAAGTAACGAGAAGAACAGAGTCGGAACTGGAGGAAGCAATCAAAGACGGCTATCTGACGACGGATCGGGAAGTATCGGAGGAAGGCGTGAGCGGCGGCGGCGCTTGTTGCGTGACTGCATTGATACGGAACGGAAATCTGGCAGTCTCGAACGTTGGCGATTGTCGTGCTGTGTTGAGCAGAAAGGGAAAAGCGGAAGCCCTAACTTCGGATCACAGGGCGTGCAGAGAAGACGAGAGAAATCGGATCGAAAAATCGGGAGGTTATGTAGATTGTTGCGGTGGTGGATGGAGAGTTCAAGGAACACTAGCTGTATCTCGAGCCATTGGAGACGAGCATCTGAAACAGTGGGTGATATCGGAGCCGGAGACGAGAGTGATGAAGATCGAGGATGATTGTCATTTCTTGATCCTTGCTTCTGATGGTCTTTGGGACAAGGTTACAAATCAGGAAGCAGTAGACATAGTAGAGGCAGTATGCGGCGTAGAGATAATGAAGAAGAAACCAAATCCGGCCTTAACAATGTCGGCCTGCAAACAGTTGGCGACTTTGTCAACATCAAGAGGCTCAATCGACGATACCACTGTTATGATCATCAAACTAAATTCCCTTTTTCATTCCTCAACCTCAATTAATCATCATCATTAA | 1137 | 48.55 | MFAVAVPKTTMTPLFSSPKLPSLLYKSSSLNSSSSSSSSSSSSSPRSLSSPRNLHVSASSPSSVDTVLKRKRPARIDVPPSMPSIGFEFGIFETPEVMEEEGEGYSVYCKRGRRRISAMEDRFSATVGIQGDSRQAFFGVFDGHGGAEVAEIAAKRMSENVIDQVTRRTESELEEAIKDGYLTTDREVSEEGVSGGGACCVTALIRNGNLAVSNVGDCRAVLSRKGKAEALTSDHRACREDERNRIEKSGGYVDCCGGGWRVQGTLAVSRAIGDEHLKQWVISEPETRVMKIEDDCHFLILASDGLWDKVTNQEAVDIVEAVCGVEIMKKKPNPALTMSACKQLATLSTSRGSIDDTTVMIIKLNSLFHSSTSINHHH | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5351272 | 5353213 | + | CcPI632755_07g004530.1 | Cco07g0453 | 183106 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco07g0453 | 378 | SUPERFAMILY | PP2C-like | 104 | 366 | IPR036457 | - | |
| Cco07g0453 | 378 | PANTHER | PROTEIN PHOSPHATASE | 96 | 362 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Cco07g0453 | 378 | MobiDBLite | consensus disorder prediction | 26 | 71 | - | - | |
| Cco07g0453 | 378 | MobiDBLite | consensus disorder prediction | 26 | 66 | - | - | |
| Cco07g0453 | 378 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cco07g0453 | 378 | Pfam | Protein phosphatase 2C | 114 | 356 | IPR001932 | - | |
| Cco07g0453 | 378 | ProSitePatterns | PPM-type phosphatase domain signature. | 137 | 145 | IPR000222 | GO:0043169(InterPro) | |
| Cco07g0453 | 378 | Gene3D | - | 98 | 371 | IPR036457 | - | |
| Cco07g0453 | 378 | CDD | PP2Cc | 104 | 364 | IPR001932 | - | |
| Cco07g0453 | 378 | SMART | PP2C_4 | 97 | 362 | IPR001932 | - | |
| Cco07g0453 | 378 | ProSiteProfiles | PPM-type phosphatase domain profile. | 104 | 364 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0065 | Cco-Chr3:645667 | Cco07g0453 | Cco-Chr7:5351272 | 6.90E-94 | dispersed | |
| Cco07g0453 | Cco-Chr7:5351272 | Cco11g0828 | Cco-Chr11:9919661 | 3.30E-69 | dispersed | |
| Cco07g0453 | Cco-Chr7:5351272 | Cco03g0125 | Cco-Chr3:1230429 | 1.80E-30 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco07g0453 | K17506 | - | csv:101208170 | 546.584 |