Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0478 | ATGGGTGGCAATTCACCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGTTTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAACTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACAACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCCTCCTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCCCTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA | 501 | 47.9 | MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDNPVFPNCPQIHSDDKPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5715761 | 5716730 | - | CcPI632755_07g004780.1 | Cco07g0478 | 183131 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0478 | 166 | Coils | Coil | 85 | 105 | - | - | |
Cco07g0478 | 166 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
Cco07g0478 | 166 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 115 | - | - | |
Cco07g0478 | 166 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0954 | Cco-Chr1:10903808 | Cco07g0478 | Cco-Chr7:5715761 | 4.40E-45 | dispersed | |
Cco02g1984 | Cco-Chr2:32785538 | Cco07g0478 | Cco-Chr7:5715761 | 2.60E-45 | dispersed | |
Cco03g0246 | Cco-Chr3:2703618 | Cco07g0478 | Cco-Chr7:5715761 | 3.00E-36 | dispersed | |
Cco03g0247 | Cco-Chr3:2730692 | Cco07g0478 | Cco-Chr7:5715761 | 3.30E-39 | dispersed | |
Cco07g0478 | Cco-Chr7:5715761 | Cco09g2460 | Cco-Chr9:38769630 | 2.70E-39 | dispersed | |
Cco04g2276 | Cco-Chr4:36324430 | Cco07g0478 | Cco-Chr7:5715761 | 4.40E-31 | transposed | |
Cco05g0941 | Cco-Chr5:8216013 | Cco07g0478 | Cco-Chr7:5715761 | 3.10E-31 | transposed | |
Cco02g2066 | Cco-Chr2:33588911 | Cco07g0478 | Cco-Chr7:5715761 | 1.60E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59612 | PF03195 | LOB | 3.70E-42 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0478 | - | - | - | 0.0 |