Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0478 ATGGGTGGCAATTCACCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGCATTTTTGCTCCCTATTTTCCCTCTGATGACCCCCACAAGTTTGCTATTGTCCATAAAGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCAGTGCAGCAAAGAGGCGACGCCGTGATGAGTTTAGTTTATGAGGCAAGTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAATCAAGTTTCACAACTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACAACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCCTCCTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCCCTCTCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA 501 47.9 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDNPVFPNCPQIHSDDKPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5715761 5716730 - CcPI632755_07g004780.1 Cco07g0478 183131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0478 166 Coils Coil 85 105 - -
Cco07g0478 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cco07g0478 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 115 - -
Cco07g0478 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0954 Cco-Chr1:10903808 Cco07g0478 Cco-Chr7:5715761 4.40E-45 dispersed
Cco02g1984 Cco-Chr2:32785538 Cco07g0478 Cco-Chr7:5715761 2.60E-45 dispersed
Cco03g0246 Cco-Chr3:2703618 Cco07g0478 Cco-Chr7:5715761 3.00E-36 dispersed
Cco03g0247 Cco-Chr3:2730692 Cco07g0478 Cco-Chr7:5715761 3.30E-39 dispersed
Cco07g0478 Cco-Chr7:5715761 Cco09g2460 Cco-Chr9:38769630 2.70E-39 dispersed
Cco04g2276 Cco-Chr4:36324430 Cco07g0478 Cco-Chr7:5715761 4.40E-31 transposed
Cco05g0941 Cco-Chr5:8216013 Cco07g0478 Cco-Chr7:5715761 3.10E-31 transposed
Cco02g2066 Cco-Chr2:33588911 Cco07g0478 Cco-Chr7:5715761 1.60E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59612 PF03195 LOB 3.70E-42 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0478 - - - 0.0