Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0495 ATGGATGAAACTCAAACCCCATTTCATTTTACCTCTTTTTGGAGATACCCATTTGGGGATTCTGGGGTTTTCTTCACTCACTCTCCTGATCGGCTCTGTTTTTCACATAAGAAGAAGGGGAAATGGAAGGTTCTGAGGAAAAACCCTAATGGGTTTGTTTCTGGTGGATTGGGTTTGTGGTTTTTGTTGCTTAATTTGGTTTTTATTCCACCTGTTTTTAGCCAGGATTGGGATGGTGTGGTTGTAACTCAGGCTGATTTTCAATCACTTCAGGCATTTAAGCAAGAGCTTGATGACCCTAAAGGGTTTTTGAAGAGTTGGAATGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGCTGGGATTAAATGTGCTAAAGGACAGGTTATTGTAATACAGCTTCCTTGGAAGGGATTAGGAGGAAGAATCACTGAGAAGATTGGCCAACTTCAGGCACTTAGGAAGCTCAGTTTACATGACAACTTCATTGGTGGATCAATCCCTTCGTCATTGGGGCTTCTTCCAAATCTTAGAGGGGTTCAGTTGTTCAATAATCGATTTTCTGGTTCGATCCCGGCTTCATTGGGACTTTGTCCTTCGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACTGGAACAATCCCACCTACTTTGGCGAACTCCACCAAGCTTTATTGGCTTAACTTGAGCTTTAACTCGTTTTCGGGTCCAATTCCATCGAGTCTTGCTCGCTCGGTGTCCCTTACTTTCCTTGCTCTTCAACATAACAATCTCTCAGGCAGCATTCCCGACTCTTGGGGGGGGGATGTCACCGAGCGAAACCGGGTGTTTCAGCTCAAGTCTCTGACTCTTGATGGCAATCTCCTCTCAGGTACCATACCAATTTCTTTAAGCAAGTTAAGTGAGCTTCAAGTGGTTTCCCTTAGTCACAATAGGTTAAATGGTGGCATTCCAGAAGAAATTGGTAAGCTTTCTCTGCTGAAAACTCTGGATGTTTCTAATAATTTCCTTAATGGAAGTTTGCCCCAAAGTTTTGATAAATTGAGAAAACTCTCTATTCTCAACTTGAGTAGAAACAGACTCAATGGTCAAATTCCTGCAACTTTAGGGAACATTTCAACTCTTACACAACTTGATTTATCTAAGAACAATCTAAGTGGAGAAATACCAGCTTCTCTTGCTGATTTGCAAGGTCTTCAATCCTTAAATGTCTCATACAACGACCTTTCGGGTTCAGTTCCTCCCGCTCTCGCTGAAAAATTTGCTGCAAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTTCGATTCGGTGCCCGTCCCCAGCCCCTTCTGAAGAAGCTCCTGCTCCTCCACCAGAAAGTATGACAACCCGCCATCGGAAGTTAAGTACTAAAGATATAATCCTCATAGCAGCAGGAGCCCTCCTTGTAGTATTGGTTATAGTTTTCTTTGTATTGCTCTGCTGCTTGATTAGGAAAAGGGCTGCTACAAAAGGAAAGGATGGTGGTGAGGCTGCAGCAGCTGGGGGTGCTAGGGTCGAGAAGGGTGTCCCTCCGACTAGCAGTGAAGTCGAAGCAGGAGCAGGGGATGCTGGTGGAAAGCTCGTCCATTTCGACGGGCAAACAGTCTTCACAGCAGATGATCTTTTGTGTGCAACAGCGGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCTACATTGGAGGATGGAAATCAAGTTGCAGTGAAGAGATTGAGAGAGAAAATCACTAAGAGCCAAAAGGAATTTGAAGCAGAGGTTAACATACTTGGTAAGATCAGGCATCCAAATTTACTAGCCTTGAGAGCTTATTACTTGGGACCCAAAGGAGAAAAGCTTCTCGTTTTCGATTACATGCCGAACGGGAGTCTTGCAGCGTTCCTGCACGCTCGTGGACCAGACACATCCATTGATTGGCTGACAAGGATGAAGATAGCTCAGGGTATGACGCGTGGCCTGTGCCACCTTCACATGCACGAGAACAGTATCCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACATTAATGCTAAGATTGCAGATTTTGGCTTGTCAAGGTTGATGACTGCAGCTGCAAGCTCAAATGTGATAGCAACAGCAGGGGCACTGGGGTACCGAGCGCCAGAGCTCTCAAAGCTGAAAAAAGCAAACACGAAAACGGACATTTACAGCCTTGGAGTAATCATACTGGAACTCTTGACTGGTAAATCCCCCGGTGAAGCCATGAACGGAGTCGATTTGCCACAATGGGTTGCATCGATCGTCAAAGAGGAGTGGACTAATGAAGTTTTTGATTTGGAACTGATGAGGGATGCCTCTACAATTGGCGATGAGTTACTAAACACTCTGAAACTTGCTTTGCATTGTGTCGACCCTTCACCGTCAGCGAGACCGGAAGTTCAACAAGTTTTGCAACAACTGGAGGAGATTAGGCCAGAAACTGCTCCAAGTTCTGGGGATGATGGAGCAGGAGGAGGAGGAGCCCCTTCAACAAGTGAGTGA 2550 45.06 MDETQTPFHFTSFWRYPFGDSGVFFTHSPDRLCFSHKKKGKWKVLRKNPNGFVSGGLGLWFLLLNLVFIPPVFSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWAGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNFIGGSIPSSLGLLPNLRGVQLFNNRFSGSIPASLGLCPSLQTLHISNNLLTGTIPPTLANSTKLYWLNLSFNSFSGPIPSSLARSVSLTFLALQHNNLSGSIPDSWGGDVTERNRVFQLKSLTLDGNLLSGTIPISLSKLSELQVVSLSHNRLNGGIPEEIGKLSLLKTLDVSNNFLNGSLPQSFDKLRKLSILNLSRNRLNGQIPATLGNISTLTQLDLSKNNLSGEIPASLADLQGLQSLNVSYNDLSGSVPPALAEKFAASSFVGNIQLCGFSGSIRCPSPAPSEEAPAPPPESMTTRHRKLSTKDIILIAAGALLVVLVIVFFVLLCCLIRKRAATKGKDGGEAAAAGGARVEKGVPPTSSEVEAGAGDAGGKLVHFDGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLAAFLHARGPDTSIDWLTRMKIAQGMTRGLCHLHMHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGGGGAPSTSE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6084952 6087607 - CcPI632755_07g004950.1 Cco07g0495 183148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0495 849 FunFam Pollen receptor-like kinase 1 632 836 - -
Cco07g0495 849 SMART LRR_typ_2 301 324 IPR003591 -
Cco07g0495 849 SMART LRR_typ_2 397 421 IPR003591 -
Cco07g0495 849 SMART LRR_typ_2 150 174 IPR003591 -
Cco07g0495 849 SMART LRR_typ_2 325 348 IPR003591 -
Cco07g0495 849 SMART LRR_typ_2 349 373 IPR003591 -
Cco07g0495 849 SMART LRR_typ_2 198 222 IPR003591 -
Cco07g0495 849 MobiDBLite consensus disorder prediction 826 849 - -
Cco07g0495 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 71 837 IPR052451 -
Cco07g0495 849 Pfam Leucine Rich Repeat 304 325 IPR001611 GO:0005515(InterPro)
Cco07g0495 849 Pfam Leucine Rich Repeat 153 172 IPR001611 GO:0005515(InterPro)
Cco07g0495 849 Pfam Leucine Rich Repeat 279 301 IPR001611 GO:0005515(InterPro)
Cco07g0495 849 Pfam Leucine Rich Repeat 328 349 IPR001611 GO:0005515(InterPro)
Cco07g0495 849 ProSiteProfiles Protein kinase domain profile. 555 826 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0495 849 SUPERFAMILY L domain-like 123 418 - -
Cco07g0495 849 Gene3D Phosphorylase Kinase; domain 1 561 632 - -
Cco07g0495 849 FunFam Leucine-rich repeat receptor-like kinase 85 196 - -
Cco07g0495 849 CDD STKc_IRAK 561 826 - -
Cco07g0495 849 MobiDBLite consensus disorder prediction 505 531 - -
Cco07g0495 849 Gene3D Ribonuclease Inhibitor 83 241 IPR032675 -
Cco07g0495 849 SUPERFAMILY Protein kinase-like (PK-like) 559 824 IPR011009 -
Cco07g0495 849 Pfam Protein tyrosine and serine/threonine kinase 558 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0495 849 Gene3D Ribonuclease Inhibitor 347 444 IPR032675 -
Cco07g0495 849 Gene3D Transferase(Phosphotransferase) domain 1 633 836 - -
Cco07g0495 849 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 269 446 - -
Cco07g0495 849 Gene3D Ribonuclease Inhibitor 242 346 IPR032675 -
Cco07g0495 849 Pfam Leucine rich repeat N-terminal domain 85 124 IPR013210 -
Cco07g0495 849 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515(InterPro)
Cco07g0495 849 Pfam Leucine rich repeat 199 259 IPR001611 GO:0005515(InterPro)
Cco07g0495 849 FunFam Leucine-rich repeat receptor-like protein kinase 540 631 - -
Cco07g0495 849 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 197 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0495 Cco-Chr7:6084952 Cco11g0287 Cco-Chr11:2900088 5.20E-70 dispersed
Cco07g0495 Cco-Chr7:6084952 Cco10g2228 Cco-Chr10:35269785 2.10E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86961 PF07714 PK_Tyr_Ser-Thr 2.30E-40 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0495 - - - 0.0