Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0514 ATGGGAGCTTCTAGCCTAACTTGTTTTTCATCGCTATTTGCAGTTTTTCCACTTCAAAATAATGCTCACAACAAATCTTTACCATTTTCTTCAAATGTTTCAAAACCCCTTTTCCGATTGAACAGGATTTGCTGCGGAGTCCCTGAGAGTGGAATTCAGCAAAACCCCTCAACTTCCAGACCTTCCTCTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGGAACCCCTATGAATATCACCATGAACTGGGCATGAACTATACTGTGATAGCTGACAATTTGATCGTCGGTTCCCAGCCTCAGAAACCCGAAGATATCAATTTCTTGAAGGAGGAAGAAGGTGTTGCCTATATTCTAAATTTACAGCAGGACAAGGATGTCGAGTACTGGGGAATCGACTTACAATCAATTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAACCAGCAAAAGATTTTGATCCAGATTCCCTGAGAAATGGATTGCCTAAAGCTGTTTCCTTGTTAGAATGGGCGATCTCAGAGGGTAAAGGAAAAGTGTACGTGCATTGCACCGCTGGACTGGGAAGGGCCCCCGCCGTCGCAATAGCTTACCTGTACTGGTTTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACCTCCAAAAGACCTTGTGGACCAAATAAAAGAGCGATCCGCGGAGCCACATACGATCTATCTAAAAATGACCCATGGAAGGAGCCCTTTGAGAAACTTGAGTTCATTGCTATTGAGAATAAGAGTTGGGATAGCAAGTGTTGCACTTGA 819 42.61 MGASSLTCFSSLFAVFPLQNNAHNKSLPFSSNVSKPLFRLNRICCGVPESGIQQNPSTSRPSSSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDINFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLLEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWFCGMNLNTAYEALTSKRPCGPNKRAIRGATYDLSKNDPWKEPFEKLEFIAIENKSWDSKCCT 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6352478 6355209 - CcPI632755_07g005140.1 Cco07g0514 183167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0514 272 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 169 228 IPR000387 GO:0016311(InterPro)
Cco07g0514 272 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 75 271 - -
Cco07g0514 272 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 234 IPR029021 -
Cco07g0514 272 CDD DSP_laforin-like 91 238 IPR045204 GO:0019203(InterPro)
Cco07g0514 272 Pfam Dual specificity phosphatase, catalytic domain 115 230 IPR000340 GO:0016311(InterPro)
Cco07g0514 272 SMART dsp_5 92 242 IPR020422 GO:0006470(InterPro)
Cco07g0514 272 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 55 251 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Cco07g0514 272 Gene3D Protein tyrosine phosphatase superfamily 75 269 IPR029021 -
Cco07g0514 272 ProSiteProfiles Dual specificity protein phosphatase domain profile. 92 249 IPR020422 GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2408 Cco-Chr5:32563885 Cco07g0514 Cco-Chr7:6352478 9.50E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0514 - - - 0.0