Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0518 ATGTCCAAAGAAAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCAAATATTCATCCCCAGCAAATTATGGGGAGAAGAACCTCATTGCAAGCTCCTCCTGGGACACTTAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTCTCCCCATACTTCTCCCCTCATGAGCCTCATAAATTTGCCTCTGTCCACAAGGTTTTCGGCGCTAGCAATGTCTCCAAGATGCTCATGGAAGTTTCGGAGAATCAGAGAGCGGATGCTGCAAATAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGCTGTATGGGCGCCATTTCAGCCCTACAACACCAAATTCAAGCCTTACAAGCTGAGCTCAATGCAGTGAGAGCTGAGATTTTAAGACACAAATTTAGAGAAGCTAATAATATGATTCACTCTTCTCCTCAACAACAACATTCGCCTTTTCTTTCTTCTTCTACAGAGGTCGTTTCGGTCGCCGTGCCACCACCGCCTCCGCCACCACCGCTACCTCCACCGCCTCATCATGATGCTTCTTCTTCTACTTCCTCCTTGTACAACCGACCGGTGGTGGCCGTGGCGGCTGATTATAGTACTATTTCAAGTGATGAAAATGTTACCTACTTTGTTACTACTTCTAGTACTGCTCATCAATTGAATTCTTAG 735 45.03 MSKERERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHSPFLSSSTEVVSVAVPPPPPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDENVTYFVTTSSTAHQLNS 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6404829 6406098 + CcPI632755_07g005180.1 Cco07g0518 183171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0518 244 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Cco07g0518 244 MobiDBLite consensus disorder prediction 162 181 - -
Cco07g0518 244 Pfam Lateral organ boundaries (LOB) domain 49 146 IPR004883 -
Cco07g0518 244 Coils Coil 128 155 - -
Cco07g0518 244 MobiDBLite consensus disorder prediction 182 199 - -
Cco07g0518 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 176 - -
Cco07g0518 244 MobiDBLite consensus disorder prediction 162 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0518 Cco-Chr7:6404829 Cco10g1378 Cco-Chr10:26834204 3.60E-32 dispersed
Cco11g0593 Cco-Chr11:6343251 Cco07g0518 Cco-Chr7:6404829 7.00E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59614 PF03195 LOB 2.20E-40 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0518 - - - 0.0