Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0535 | ATGGCTTTTTACTCACCATTTTCCTCCCTCTTCCTTCTTCCTTTCTTCTTCATCTCTTTTTGCTTCGTTTTCGCCGACTACGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGCGGTGGTGACGCATCTGGCACTATGGGTGGAGCTTGTGGATATGGGAACTTGTACAGCCAAGGATATGGCACAAACACAGTGGCGCTTAGCACGGCGCTATTCAACAACGGGCTAAGTTGTGGGGCTTGCTTCGAAATGACTTGTACAAATGATCCTAAATGGTGCCTTCCTGGAACCATTAGGGTCACTGCCACTAACTTCTGCCCTCCTAACTTTGCTCTCCCCAACAACAATGGCGGTTGGTGCAACCCTCCACTCCAACACTTCGACATGGCTGAACCTGCCTTTCTTCAGATTGCACAGTACCGTGCTGGAATCGTCCCCGTCTCCTTTCGTAGAGTACCATGTATGAAGAAAGGTGGAGTGAGGTTCACAATCAATGGCCACTCCTACTTCAACCTTGTTTTGATCACGAACGTGGGCGGCGCAGGTGATGTCCACGCTGTGTCCATAAAGGGGTCTCGAACAAGATGGCAAGCCATGTCCAGAAATTGGGGCCAAAATTGGCAAAGCAACAACTATCTCAACGGCCAAGGTCTTTCCTTTCAAGTCACTCTCAGCGATGGTCACACTCTCACTGCCTATAATCTTGTCCCTTCCAATTGGCAATTTGGCCAAACCTTTGAAGGCCCTCAATTCTAA | 759 | 49.8 | MAFYSPFSSLFLLPFFFISFCFVFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTRWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGHTLTAYNLVPSNWQFGQTFEGPQF | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6861690 | 6864737 | - | CcPI632755_07g005350.1 | Cco07g0535 | 183188 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0535 | 252 | Gene3D | - | 22 | 156 | IPR036908 | - | |
Cco07g0535 | 252 | PANTHER | EXPANSIN-A15 | 16 | 252 | IPR002963 | GO:0009664(InterPro) | |
Cco07g0535 | 252 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 170 | 249 | IPR007117 | - | |
Cco07g0535 | 252 | Pfam | Expansin C-terminal domain | 161 | 238 | IPR007117 | - | |
Cco07g0535 | 252 | CDD | DPBB_EXPA_N | 29 | 155 | - | - | |
Cco07g0535 | 252 | SUPERFAMILY | PHL pollen allergen | 157 | 249 | IPR036749 | - | |
Cco07g0535 | 252 | Pfam | Lytic transglycolase | 65 | 150 | IPR009009 | - | |
Cco07g0535 | 252 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 48 | 160 | IPR007112 | - | |
Cco07g0535 | 252 | Gene3D | - | 160 | 252 | IPR036749 | - | |
Cco07g0535 | 252 | SMART | dpbb_1 | 65 | 150 | IPR007112 | - | |
Cco07g0535 | 252 | FunFam | Expansin | 160 | 252 | - | - | |
Cco07g0535 | 252 | PRINTS | Expansin/Lol pI family signature | 69 | 87 | IPR007118 | GO:0005576(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin/Lol pI family signature | 197 | 211 | IPR007118 | GO:0005576(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin/Lol pI family signature | 235 | 249 | IPR007118 | GO:0005576(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin/Lol pI family signature | 29 | 44 | IPR007118 | GO:0005576(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin/Lol pI family signature | 47 | 65 | IPR007118 | GO:0005576(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin/Lol pI family signature | 143 | 159 | IPR007118 | GO:0005576(InterPro) | |
Cco07g0535 | 252 | SUPERFAMILY | Barwin-like endoglucanases | 29 | 178 | IPR036908 | - | |
Cco07g0535 | 252 | PRINTS | Expansin signature | 118 | 135 | IPR002963 | GO:0009664(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin signature | 235 | 251 | IPR002963 | GO:0009664(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin signature | 99 | 109 | IPR002963 | GO:0009664(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin signature | 87 | 98 | IPR002963 | GO:0009664(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin signature | 206 | 227 | IPR002963 | GO:0009664(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin signature | 135 | 148 | IPR002963 | GO:0009664(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin signature | 60 | 74 | IPR002963 | GO:0009664(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin signature | 159 | 171 | IPR002963 | GO:0009664(InterPro) | |
Cco07g0535 | 252 | PRINTS | Expansin signature | 171 | 192 | IPR002963 | GO:0009664(InterPro) | |
Cco07g0535 | 252 | FunFam | Expansin | 22 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1004 | Cco-Chr4:25639013 | Cco07g0535 | Cco-Chr7:6861690 | 1.20E-105 | dispersed | |
Cco07g0335 | Cco-Chr7:3494809 | Cco07g0535 | Cco-Chr7:6861690 | 4.80E-104 | dispersed | |
Cco07g0535 | Cco-Chr7:6861690 | Cco11g0985 | Cco-Chr11:16321521 | 3.00E-106 | dispersed | |
Cco10g0638 | Cco-Chr10:8819650 | Cco07g0535 | Cco-Chr7:6861690 | 2.80E-69 | transposed | |
Cco11g0583 | Cco-Chr11:6253081 | Cco07g0535 | Cco-Chr7:6861690 | 5.40E-121 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0535 | - | - | - | 0.0 |