Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0535 ATGGCTTTTTACTCACCATTTTCCTCCCTCTTCCTTCTTCCTTTCTTCTTCATCTCTTTTTGCTTCGTTTTCGCCGACTACGGTGGCTGGCAGAGCGGCCACGCCACCTTTTATGGCGGTGGTGACGCATCTGGCACTATGGGTGGAGCTTGTGGATATGGGAACTTGTACAGCCAAGGATATGGCACAAACACAGTGGCGCTTAGCACGGCGCTATTCAACAACGGGCTAAGTTGTGGGGCTTGCTTCGAAATGACTTGTACAAATGATCCTAAATGGTGCCTTCCTGGAACCATTAGGGTCACTGCCACTAACTTCTGCCCTCCTAACTTTGCTCTCCCCAACAACAATGGCGGTTGGTGCAACCCTCCACTCCAACACTTCGACATGGCTGAACCTGCCTTTCTTCAGATTGCACAGTACCGTGCTGGAATCGTCCCCGTCTCCTTTCGTAGAGTACCATGTATGAAGAAAGGTGGAGTGAGGTTCACAATCAATGGCCACTCCTACTTCAACCTTGTTTTGATCACGAACGTGGGCGGCGCAGGTGATGTCCACGCTGTGTCCATAAAGGGGTCTCGAACAAGATGGCAAGCCATGTCCAGAAATTGGGGCCAAAATTGGCAAAGCAACAACTATCTCAACGGCCAAGGTCTTTCCTTTCAAGTCACTCTCAGCGATGGTCACACTCTCACTGCCTATAATCTTGTCCCTTCCAATTGGCAATTTGGCCAAACCTTTGAAGGCCCTCAATTCTAA 759 49.8 MAFYSPFSSLFLLPFFFISFCFVFADYGGWQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACFEMTCTNDPKWCLPGTIRVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTRWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGHTLTAYNLVPSNWQFGQTFEGPQF 252
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 6861690 6864737 - CcPI632755_07g005350.1 Cco07g0535 183188
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0535 252 Gene3D - 22 156 IPR036908 -
Cco07g0535 252 PANTHER EXPANSIN-A15 16 252 IPR002963 GO:0009664(InterPro)
Cco07g0535 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Cco07g0535 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Cco07g0535 252 CDD DPBB_EXPA_N 29 155 - -
Cco07g0535 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Cco07g0535 252 Pfam Lytic transglycolase 65 150 IPR009009 -
Cco07g0535 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Cco07g0535 252 Gene3D - 160 252 IPR036749 -
Cco07g0535 252 SMART dpbb_1 65 150 IPR007112 -
Cco07g0535 252 FunFam Expansin 160 252 - -
Cco07g0535 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Cco07g0535 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576(InterPro)
Cco07g0535 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576(InterPro)
Cco07g0535 252 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Cco07g0535 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Cco07g0535 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576(InterPro)
Cco07g0535 252 SUPERFAMILY Barwin-like endoglucanases 29 178 IPR036908 -
Cco07g0535 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664(InterPro)
Cco07g0535 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664(InterPro)
Cco07g0535 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664(InterPro)
Cco07g0535 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664(InterPro)
Cco07g0535 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664(InterPro)
Cco07g0535 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664(InterPro)
Cco07g0535 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Cco07g0535 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664(InterPro)
Cco07g0535 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664(InterPro)
Cco07g0535 252 FunFam Expansin 22 156 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1004 Cco-Chr4:25639013 Cco07g0535 Cco-Chr7:6861690 1.20E-105 dispersed
Cco07g0335 Cco-Chr7:3494809 Cco07g0535 Cco-Chr7:6861690 4.80E-104 dispersed
Cco07g0535 Cco-Chr7:6861690 Cco11g0985 Cco-Chr11:16321521 3.00E-106 dispersed
Cco10g0638 Cco-Chr10:8819650 Cco07g0535 Cco-Chr7:6861690 2.80E-69 transposed
Cco11g0583 Cco-Chr11:6253081 Cco07g0535 Cco-Chr7:6861690 5.40E-121 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0535 - - - 0.0