Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0536 ATGGAACTCCCCAATTCCACTAATCAAATGGCTTCCTCTTCCAACCCCACCACCCCATTTCGCGGTTCCTTCCACCGTCGAGCCCATTCCGAGGTCCATTTCCGGATTCCCGATGATCTCGATCTTGTCTCCGACCCTTTCGACGCCCCTTCTTCTGGATTTGGAGATCTGGGCTTCGAGGATGATCTCTTGTGCACTTTCATGGACATCGAGAAGATCGGATCCAAAATCGACAATGGGTCTTCGTCGAATCCTGAAGTGGCTGGCGGCGGTACTGCGGCGGAGAATGTTGAAGGGGAGAAAATCTCCCGCCCCAGGCACCGTCATAGCAATTCTGCTGATGGGTCTTCTATTATGGAGTCTATTGAGGCTAAGAAGGCAATGGATCCTGATAAGCTCGCTGAGTTGTGGACAATTGATCCTAAACGTGCCAAAAGGATTTTGGCGAATAGACAGTCTGCTGCTAGGTCAAAAGAGAGAAAAGCTCGCTACATAATGGAACTTGAGAGAAAAGTTCAAAGCCTTCAGACCGAAGCGACAACGCTCTCTGCACAGCTCACGTTGTACCAGAGAGATACCACAGGGCTTTCAACAGAAAACTCAGAGCTCAAACTTCGTTTACAAGCTATGGAACAGCAAGCTCATCTACGCGATGCTCTAAATGAAGCTTTGAAAAAGGAAGTTGAGCGGCTCAAGATCGCAACTGGAGAAGTAATGACAGCTACAGATTCGTATAACTTTGGAATGCCTCAAGTTTCATATCCCCAATCTTGCTTCTCACACCAACCACAACCTGGGCGACACAACCCACAGAGGACGACGCAAGGGCCCCAAGTTCATCCATTCCATTCTAGTTTACCGAACCCACATCAGTCTTTGTTTGTTGCATCGCACCAGCCTCATGCCTTGACAGAAATGTTTCATCAAGATCCTATTAGCCGATTGCAGGGTCTCGACATCAGTAGCAGAGGCACAGAAATAAAGCCAGAAGGCTCCTCTATATCCGTAGGTGGGGCTAGGGAAATTACTAAATTGTCCACAGTTGAAGGGTTATTGGGGTCCCTCATGGGACTGCCATTAAAGGCCACATGGTAG 1095 48.58 MELPNSTNQMASSSNPTTPFRGSFHRRAHSEVHFRIPDDLDLVSDPFDAPSSGFGDLGFEDDLLCTFMDIEKIGSKIDNGSSSNPEVAGGGTAAENVEGEKISRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENSELKLRLQAMEQQAHLRDALNEALKKEVERLKIATGEVMTATDSYNFGMPQVSYPQSCFSHQPQPGRHNPQRTTQGPQVHPFHSSLPNPHQSLFVASHQPHALTEMFHQDPISRLQGLDISSRGTEIKPEGSSISVGGAREITKLSTVEGLLGSLMGLPLKATW 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6877146 6883334 - CcPI632755_07g005360.1 Cco07g0536 183189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0536 364 MobiDBLite consensus disorder prediction 1 21 - -
Cco07g0536 364 Coils Coil 158 185 - -
Cco07g0536 364 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 11 291 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco07g0536 364 SUPERFAMILY Leucine zipper domain 142 193 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0536 364 FunFam probable transcription factor PosF21 141 194 - -
Cco07g0536 364 MobiDBLite consensus disorder prediction 99 113 - -
Cco07g0536 364 MobiDBLite consensus disorder prediction 258 279 - -
Cco07g0536 364 Coils Coil 217 237 - -
Cco07g0536 364 Gene3D - 141 194 - -
Cco07g0536 364 CDD bZIP_plant_RF2 143 192 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0536 364 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 140 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0536 364 MobiDBLite consensus disorder prediction 78 115 - -
Cco07g0536 364 SMART brlzneu 138 202 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g0536 364 MobiDBLite consensus disorder prediction 1 23 - -
Cco07g0536 364 Pfam bZIP transcription factor 142 196 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2034 Cco-Chr2:33335363 Cco07g0536 Cco-Chr7:6877146 8.70E-73 dispersed
Cco05g0860 Cco-Chr5:7265912 Cco07g0536 Cco-Chr7:6877146 2.90E-50 dispersed
Cco05g0863 Cco-Chr5:7305328 Cco07g0536 Cco-Chr7:6877146 2.90E-50 dispersed
Cco07g0536 Cco-Chr7:6877146 Cco08g0830 Cco-Chr8:20133291 1.10E-50 dispersed
Cco07g0536 Cco-Chr7:6877146 Cco02g0233 Cco-Chr2:2211156 5.40E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59615 PF00170 bZIP_1 1.80E-08 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0536 - - - 0.0