Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0536 | ATGGAACTCCCCAATTCCACTAATCAAATGGCTTCCTCTTCCAACCCCACCACCCCATTTCGCGGTTCCTTCCACCGTCGAGCCCATTCCGAGGTCCATTTCCGGATTCCCGATGATCTCGATCTTGTCTCCGACCCTTTCGACGCCCCTTCTTCTGGATTTGGAGATCTGGGCTTCGAGGATGATCTCTTGTGCACTTTCATGGACATCGAGAAGATCGGATCCAAAATCGACAATGGGTCTTCGTCGAATCCTGAAGTGGCTGGCGGCGGTACTGCGGCGGAGAATGTTGAAGGGGAGAAAATCTCCCGCCCCAGGCACCGTCATAGCAATTCTGCTGATGGGTCTTCTATTATGGAGTCTATTGAGGCTAAGAAGGCAATGGATCCTGATAAGCTCGCTGAGTTGTGGACAATTGATCCTAAACGTGCCAAAAGGATTTTGGCGAATAGACAGTCTGCTGCTAGGTCAAAAGAGAGAAAAGCTCGCTACATAATGGAACTTGAGAGAAAAGTTCAAAGCCTTCAGACCGAAGCGACAACGCTCTCTGCACAGCTCACGTTGTACCAGAGAGATACCACAGGGCTTTCAACAGAAAACTCAGAGCTCAAACTTCGTTTACAAGCTATGGAACAGCAAGCTCATCTACGCGATGCTCTAAATGAAGCTTTGAAAAAGGAAGTTGAGCGGCTCAAGATCGCAACTGGAGAAGTAATGACAGCTACAGATTCGTATAACTTTGGAATGCCTCAAGTTTCATATCCCCAATCTTGCTTCTCACACCAACCACAACCTGGGCGACACAACCCACAGAGGACGACGCAAGGGCCCCAAGTTCATCCATTCCATTCTAGTTTACCGAACCCACATCAGTCTTTGTTTGTTGCATCGCACCAGCCTCATGCCTTGACAGAAATGTTTCATCAAGATCCTATTAGCCGATTGCAGGGTCTCGACATCAGTAGCAGAGGCACAGAAATAAAGCCAGAAGGCTCCTCTATATCCGTAGGTGGGGCTAGGGAAATTACTAAATTGTCCACAGTTGAAGGGTTATTGGGGTCCCTCATGGGACTGCCATTAAAGGCCACATGGTAG | 1095 | 48.58 | MELPNSTNQMASSSNPTTPFRGSFHRRAHSEVHFRIPDDLDLVSDPFDAPSSGFGDLGFEDDLLCTFMDIEKIGSKIDNGSSSNPEVAGGGTAAENVEGEKISRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENSELKLRLQAMEQQAHLRDALNEALKKEVERLKIATGEVMTATDSYNFGMPQVSYPQSCFSHQPQPGRHNPQRTTQGPQVHPFHSSLPNPHQSLFVASHQPHALTEMFHQDPISRLQGLDISSRGTEIKPEGSSISVGGAREITKLSTVEGLLGSLMGLPLKATW | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6877146 | 6883334 | - | CcPI632755_07g005360.1 | Cco07g0536 | 183189 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0536 | 364 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cco07g0536 | 364 | Coils | Coil | 158 | 185 | - | - | |
Cco07g0536 | 364 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 11 | 291 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco07g0536 | 364 | SUPERFAMILY | Leucine zipper domain | 142 | 193 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g0536 | 364 | FunFam | probable transcription factor PosF21 | 141 | 194 | - | - | |
Cco07g0536 | 364 | MobiDBLite | consensus disorder prediction | 99 | 113 | - | - | |
Cco07g0536 | 364 | MobiDBLite | consensus disorder prediction | 258 | 279 | - | - | |
Cco07g0536 | 364 | Coils | Coil | 217 | 237 | - | - | |
Cco07g0536 | 364 | Gene3D | - | 141 | 194 | - | - | |
Cco07g0536 | 364 | CDD | bZIP_plant_RF2 | 143 | 192 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g0536 | 364 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 140 | 203 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g0536 | 364 | MobiDBLite | consensus disorder prediction | 78 | 115 | - | - | |
Cco07g0536 | 364 | SMART | brlzneu | 138 | 202 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco07g0536 | 364 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cco07g0536 | 364 | Pfam | bZIP transcription factor | 142 | 196 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2034 | Cco-Chr2:33335363 | Cco07g0536 | Cco-Chr7:6877146 | 8.70E-73 | dispersed | |
Cco05g0860 | Cco-Chr5:7265912 | Cco07g0536 | Cco-Chr7:6877146 | 2.90E-50 | dispersed | |
Cco05g0863 | Cco-Chr5:7305328 | Cco07g0536 | Cco-Chr7:6877146 | 2.90E-50 | dispersed | |
Cco07g0536 | Cco-Chr7:6877146 | Cco08g0830 | Cco-Chr8:20133291 | 1.10E-50 | dispersed | |
Cco07g0536 | Cco-Chr7:6877146 | Cco02g0233 | Cco-Chr2:2211156 | 5.40E-08 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59615 | PF00170 | bZIP_1 | 1.80E-08 | CL0018 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0536 | - | - | - | 0.0 |