Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0539 ATGGAGGCTTCTTCTTCTTCAATCAAATGGAGCTCTGAAAATGAAAATGGATCTCAACCTCATGTTCTTGCTGTTGATGATAATCTTGTTGATCGTAAACTTGTTGAGAAGTTACTCAAAAACTCCTCTTGTAAAGTAACGACGGCAGAAAATGGTGTTAGTGCTTTGGAGTTCTTAGGTTTGTTGGATGAACATAATCAACACAGCAACTTAGAATGCTCCAACAGGTCAAAGGTGAACATGATCATCACAGATTATTGCATGCCAGGAATGTCTGGATATGAACTTCTCAAGAAAATCAAGAGATCTTCGATGATGAAGGAAGTTCCTGTGGTGGTTGTATCATCGGAAAACGTGCCCACTCGCATCAACAAGTGTTTGAAAGAAGGAGCAGAGATGTTCATGCTGAAACCTTTGAAACAATCTGATGTGGTGAAACTCAAGTGCCAGTTGATGAACTGA 462 39.83 MEASSSSIKWSSENENGSQPHVLAVDDNLVDRKLVEKLLKNSSCKVTTAENGVSALEFLGLLDEHNQHSNLECSNRSKVNMIITDYCMPGMSGYELLKKIKRSSMMKEVPVVVVSSENVPTRINKCLKEGAEMFMLKPLKQSDVVKLKCQLMN 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6919100 6921288 - CcPI632755_07g005390.1 Cco07g0539 183192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0539 153 ProSiteProfiles Response regulatory domain profile. 21 152 IPR001789 GO:0000160(InterPro)
Cco07g0539 153 SUPERFAMILY CheY-like 18 147 IPR011006 -
Cco07g0539 153 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 148 IPR045279 GO:0009736(InterPro)
Cco07g0539 153 Pfam Response regulator receiver domain 22 146 IPR001789 GO:0000160(InterPro)
Cco07g0539 153 Gene3D - 16 153 - -
Cco07g0539 153 SMART REC_2 20 148 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0539 Cco-Chr7:6919100 Cco10g1598 Cco-Chr10:29261022 3.80E-40 dispersed
Cco07g0539 Cco-Chr7:6919100 Cco06g1869 Cco-Chr6:28929583 1.90E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59616 PF00072 Response_reg 1.00E-21 CL0304 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0539 K14492 - csv:101208898 248.825