Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0542 ATGCAGGCCACTTGGGTGGAGGTCTATAACTTGCGCGAAAAGTCTAATCTCAGTGTTGGTTACCGGATCCTTCTTCTTAATCTGAATAATCTTCGCTCAGCAACTCACTTTAACGTGTTCAAAGCTGCTGTTCAAGATCCGAAGCTGAAGCTCGCGAGCTGGAACGAAGATGACGATAGTCCCTGCAATTGGACTGGTGTTCAATGCAGCCCCAGATCCAACCGGGTCATCGAGCTCAACCTCGATGGGTTTTCTCTCTCGGGTCGGCTCGGCCGCGGACTTTTCCAGTTGGAGTTTCTGCAGAGATTGTCGCTCTCGAAGAACAATCTTAGTGGGAATATAAGCCCTAATTTCGCTCGAGTCGACAATCTTCAGGTGATTGATTTGAGTGGGAATAATTTCTCTGGTACTGTTCCGGATGATTTTTTTCGTCAATGTAGGTCATTGAGAGTCATCTCTTTGGCCAACAACAAATTTTCTGGGGAAATTCCTGATAGTTTGAGCTTGTGCGGGAGTCTTATTGCAGTTAACTTTTCCTCAAATCAGTTTTCGGGTTCTTTGCCTTCTGGGATTTGGTCTTTCAGTGGGCTTCGATCTTTGGACTTGTCTGATAATGCTCTAGTGGGCGAAATTCCGAAAGTAAGTGAGAATTTGTATAATCTGCGGACTCTTAACTTGAGCAAGAATCGGTTTTCTGGACAGATTCCTGATGGTATTGGGAGCTGTTTGCTTCTGAGGTCCATTGATCTTAGCGATAATTCATTCTCTGGGACTCTTCCTCAGACCATGCAGAAACTTGTTTTGTGTGGTGATCTGATTTTAAGCAGGAATTTGTTTGAAGGAGATGTTCCAGAGTGGATAGGAGAAATGAAAAACCTTGAAACTCTGGACTTTTCAGGGAACAATTTTACTGGCCGTATACCAACTACAATGGAGAATCTTCAATATCTAAAAGTATTAAATCTTTCTTCAAATGGCTTTACTGATAGCTTTCCAGAATCTGTGTTGAAGTGCCAAAGCCTTTTGGCATTAGATTTCAGCCATAACTTGATCACGGGTAATCTTCCCGCGATCGGAAGTTTAGGCAAGCTGCAGTTTCTGAACCTGTCTGGGAATTCTTTTGTTGGTCCTATTCCAGAAACTATTGGAGATTTGAAAGCTTTAAGCATTCTTGACTTGAGTGGAAATCAGCTGAATGAAACCATTCCTGATGCAATTGGAGGAGCTGTGTCCCTAATTGAGCTGAAGCTGGATGGAAATTTTCTAGGCGGTGAAATTCCCTCTTCAATTGGTCACTGTTCTTTCCTTACAGCTCTGTTCATATCACACAATAACTTAACTGGTCCGATACCAGCAGCACTATCTAAACTCTCTTATCTTCAAAATGTCGATTTATCCTTCAACAATCTCAATGGAACCCTTCCGAAGCAGTTGTCTAATCTTCCAAACCTTCTTGTGTTCAATATATCTCACAACAACCTCAACGGTGAACTGCCTGGTGGTGGATTCTTTAACACCATCTCCCCTTCATCTGTTGCTAGCAATCCATCCCTTTGTGGCGCTGTTGTTAATAAGTCTTGCCCTTCTGTCCTTCCAAAACCTATCGTTCTTAATCCCAACTCCACTTCAGATTCCATTTCCAGCTCACTGCCTCCAAGTAATAATCACAGAAGAAATAGAAATATCCTCAGCATTTCTGCGCTGGTTGCCATTGGTGCCGCGGCTTTCATAATCATTGGTGTTATATCGATCACCATCCTGAACCTTCGTGTTCAATCACCCACATCTTCTTCGTCCGCAGCTGCACTCGCATTATCTGTAGGGGATGATTTCAGTAATTCCTCCAGTCCTGATGCGAATTCTGGAAAGCTTGTGGTGTTATCAGGAGAACTTGACTTTAGCACAGGAGCACATGCCCTGCTGAACAAGGATTGTGAACTTGGGCGTGGTGGATTTGGAGCAGTTTACCATACTATTCTGCGGGACGGACACTCCGTTGCAATCAAGAAGCTTACAGTTTCTAGCCTTGTCAAGTCCCAAGAGGATTTCGAGAGGGAAGTTAGGAAGTTCGGGATTGTCAGGCACCAAAATCTCGTTGCACTGGAAGGTTATTATTGGACTCCCTCACTACAGCTCCTTATTTACGAATTTGTCCCCGGAGGTAGCTTGTATAGGTTGCTCCATGAAGCATCAGATGACAGTGTTCTTTCATGGAATGAGCGATTCGACATAATTCTTGGGACAGCAAAAGGTCTTGCTCACTTACATCAATCAAACACAATCCACTATAACATAAAATCCAGCAACATTCTTATTGATTGTAATGGTCAACCGAAGGTGGGAGATTATGGGCTAGCTAGATTACTGCCAATGTTAGACCGTTATGTTTTAAGTAGCAAGATCCAGAGCGCAATTGGTTACATGGCACCAGAGTTTGCTTGCAGGACGGTAAAGATAACCGAAAAATGTGATGTGTATGGTTTTGGGATATTGATTCTAGAGGTGGTTACGGGGAAGAGACCTGTCGAGTACATGGAAGATGACGTTGCAGTCCTCTGTGACATGGTCAGAGAAGCAGTGGAAGAAGGAAGAGCGGAAGAATGCATCGACAGGAAACTGAGGGGGTATTTCCCTGTCGAAGAGGCTGTTCCTGTGTTAAAATTAGGGTTGATATGCACCTCTCATGTGCCATCAAACCGACCCGACATGAGAGAAATGGTCAAGATATTGGAGATGATCAAATGCCCAGCTGAATTACAAGAGGAATTGGGATAA 2775 43.71 MQATWVEVYNLREKSNLSVGYRILLLNLNNLRSATHFNVFKAAVQDPKLKLASWNEDDDSPCNWTGVQCSPRSNRVIELNLDGFSLSGRLGRGLFQLEFLQRLSLSKNNLSGNISPNFARVDNLQVIDLSGNNFSGTVPDDFFRQCRSLRVISLANNKFSGEIPDSLSLCGSLIAVNFSSNQFSGSLPSGIWSFSGLRSLDLSDNALVGEIPKVSENLYNLRTLNLSKNRFSGQIPDGIGSCLLLRSIDLSDNSFSGTLPQTMQKLVLCGDLILSRNLFEGDVPEWIGEMKNLETLDFSGNNFTGRIPTTMENLQYLKVLNLSSNGFTDSFPESVLKCQSLLALDFSHNLITGNLPAIGSLGKLQFLNLSGNSFVGPIPETIGDLKALSILDLSGNQLNETIPDAIGGAVSLIELKLDGNFLGGEIPSSIGHCSFLTALFISHNNLTGPIPAALSKLSYLQNVDLSFNNLNGTLPKQLSNLPNLLVFNISHNNLNGELPGGGFFNTISPSSVASNPSLCGAVVNKSCPSVLPKPIVLNPNSTSDSISSSLPPSNNHRRNRNILSISALVAIGAAAFIIIGVISITILNLRVQSPTSSSSAAALALSVGDDFSNSSSPDANSGKLVVLSGELDFSTGAHALLNKDCELGRGGFGAVYHTILRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGIVRHQNLVALEGYYWTPSLQLLIYEFVPGGSLYRLLHEASDDSVLSWNERFDIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSAIGYMAPEFACRTVKITEKCDVYGFGILILEVVTGKRPVEYMEDDVAVLCDMVREAVEEGRAEECIDRKLRGYFPVEEAVPVLKLGLICTSHVPSNRPDMREMVKILEMIKCPAELQEELG 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6960531 6967603 + CcPI632755_07g005420.1 Cco07g0542 183195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0542 924 Pfam Protein tyrosine and serine/threonine kinase 643 909 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0542 924 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515(InterPro)
Cco07g0542 924 Pfam Leucine Rich Repeat 436 457 IPR001611 GO:0005515(InterPro)
Cco07g0542 924 Pfam Leucine Rich Repeat 460 481 IPR001611 GO:0005515(InterPro)
Cco07g0542 924 Pfam Leucine Rich Repeat 411 433 IPR001611 GO:0005515(InterPro)
Cco07g0542 924 Pfam Leucine Rich Repeat 123 142 IPR001611 GO:0005515(InterPro)
Cco07g0542 924 Pfam Leucine Rich Repeat 100 119 IPR001611 GO:0005515(InterPro)
Cco07g0542 924 Pfam Leucine Rich Repeat 388 408 IPR001611 GO:0005515(InterPro)
Cco07g0542 924 Pfam Leucine Rich Repeat 148 168 IPR001611 GO:0005515(InterPro)
Cco07g0542 924 Gene3D Phosphorylase Kinase; domain 1 630 717 - -
Cco07g0542 924 SUPERFAMILY RNI-like 78 399 - -
Cco07g0542 924 SMART LRR_typ_2 290 314 IPR003591 -
Cco07g0542 924 SMART LRR_typ_2 97 120 IPR003591 -
Cco07g0542 924 SMART LRR_typ_2 481 505 IPR003591 -
Cco07g0542 924 SMART LRR_typ_2 121 145 IPR003591 -
Cco07g0542 924 SMART LRR_typ_2 194 217 IPR003591 -
Cco07g0542 924 SMART LRR_typ_2 218 242 IPR003591 -
Cco07g0542 924 SMART LRR_typ_2 385 409 IPR003591 -
Cco07g0542 924 FunFam Inactive leucine-rich repeat receptor-like protein kinase 189 285 - -
Cco07g0542 924 Gene3D Ribonuclease Inhibitor 315 531 IPR032675 -
Cco07g0542 924 FunFam Leucine-rich repeat receptor-like protein kinase 32 188 - -
Cco07g0542 924 ProSiteProfiles Protein kinase domain profile. 641 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0542 924 Pfam Leucine rich repeat N-terminal domain 39 70 IPR013210 -
Cco07g0542 924 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 635 717 - -
Cco07g0542 924 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 718 919 - -
Cco07g0542 924 SUPERFAMILY L domain-like 361 515 - -
Cco07g0542 924 SUPERFAMILY Protein kinase-like (PK-like) 644 917 IPR011009 -
Cco07g0542 924 PANTHER OS05G0588300 PROTEIN 272 382 IPR050994 -
Cco07g0542 924 Gene3D Ribonuclease Inhibitor 34 313 IPR032675 -
Cco07g0542 924 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 356 530 - -
Cco07g0542 924 Pfam Leucine rich repeat 316 373 IPR001611 GO:0005515(InterPro)
Cco07g0542 924 Pfam Leucine rich repeat 196 254 IPR001611 GO:0005515(InterPro)
Cco07g0542 924 CDD STKc_IRAK 647 911 - -
Cco07g0542 924 ProSitePatterns Protein kinases ATP-binding region signature. 647 670 IPR017441 GO:0005524(InterPro)
Cco07g0542 924 Gene3D Transferase(Phosphotransferase) domain 1 718 922 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0542 Cco-Chr7:6960531 Cco10g2265 Cco-Chr10:35515033 2.00E-22 dispersed
Cco11g0578 Cco-Chr11:6196314 Cco07g0542 Cco-Chr7:6960531 3.10E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86962 PF07714 PK_Tyr_Ser-Thr 1.90E-40 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0542 - - - 0.0