Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0544 | ATGTCCTCCGAAGACATCAATGGCCTCAACTCCCAGCTCGTCTTCCAAGACGAAGCCCTCCCCTTCAATTGCTCCACCACGCCGCAGCGTCGCGTCCCCGACCCAGGTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGGCGTGGACCGAGACCGATTCTTTTCCCACCAGGGTGAAGATTTCCGCCGCAGTGTTTTCGGTCACACCCGGAATTGGAATGGGAATGGGACTGCGAGAACTGGAAGTGGGAAAGGATCGGATGAGGATGATGATGATGACGACGATGATGAAGATGAAGTCGATGATGGTGATGATGATGTTGAGGGGCTTGTTTCTTTGGATGATGTCAATAAGTGTACTAAAACTTCTATCCCCAACGATAGCAACAATGATAGAAGCGATCAGAGTAGTGAGGGCTTGAAGAATGGGACCAACAAATTGGGAAATGGGAAGCTTAAGCACCATTCTTCTTTTGGTGGAACTCTGTTAGTCAAGGATGGTTTAGTTGGCTCTTCAGGCAACAACACAGGAGCAACTCAGAGTGAGAACCATCCGCAGGGAAGGTTGGGGAACTACCCAAATGCTGTTACAATTGCAGAACCTGAAAGTGATGCTTATTATTCCCAGTATTTGCAAAGCACTGAAGTGTCTGCTTCTGGGCAGAAGGATTTGGGTATGGAAAATGGATGTGGTTTTGGGAGAAGGGATGTGTCGTTTTCAGGAGAGCCTGGAGAGTCTCTGAGAGCAATTCTCACTGACCCTGTGACGGGCGCTCTCATGGATGATGCAATGATATTGCCGTGTGGACATTCCTTTGGGAGCGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCATGCTCTCAGTCAGTTTCTGAAGACTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGGGAAGAAGAATTAATATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTCTCATGGATACCACAAGAGGTCGAGGTGTTCAGTTTCCTTTCGCAGTGACTGATAGGGTAATTATCAAGGGGAACAAGAGGACACCGCAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCGCTTGCGAAGGTTCCAAATGATGCAACATCAAAGACGATAACAAGGAAAATCACACCAAATTGGCTTTAG | 1305 | 47.59 | MSSEDINGLNSQLVFQDEALPFNCSTTPQRRVPDPGPKTRELCGFMDDKLFPGVDRDRFFSHQGEDFRRSVFGHTRNWNGNGTARTGSGKGSDEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCTKTSIPNDSNNDRSDQSSEGLKNGTNKLGNGKLKHHSSFGGTLLVKDGLVGSSGNNTGATQSENHPQGRLGNYPNAVTIAEPESDAYYSQYLQSTEVSASGQKDLGMENGCGFGRRDVSFSGEPGESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELIFYRSPKRRRERFEQDKGGYGDLTLMDTTRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATSKTITRKITPNWL | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 6986984 | 6991225 | + | CcPI632755_07g005440.1 | Cco07g0544 | 183197 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0544 | 434 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 323 | IPR013083 | - | |
Cco07g0544 | 434 | MobiDBLite | consensus disorder prediction | 72 | 159 | - | - | |
Cco07g0544 | 434 | ProSiteProfiles | U-box domain profile. | 252 | 324 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco07g0544 | 434 | MobiDBLite | consensus disorder prediction | 175 | 199 | - | - | |
Cco07g0544 | 434 | SUPERFAMILY | RING/U-box | 252 | 324 | - | - | |
Cco07g0544 | 434 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED | 8 | 425 | - | - | |
Cco07g0544 | 434 | MobiDBLite | consensus disorder prediction | 122 | 150 | - | - | |
Cco07g0544 | 434 | MobiDBLite | consensus disorder prediction | 93 | 116 | - | - | |
Cco07g0544 | 434 | MobiDBLite | consensus disorder prediction | 175 | 196 | - | - | |
Cco07g0544 | 434 | MobiDBLite | consensus disorder prediction | 74 | 88 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0544 | Cco-Chr7:6986984 | Cco11g0136 | Cco-Chr11:1424737 | 4.30E-36 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0544 | - | - | - | 0.0 |