Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0544 ATGTCCTCCGAAGACATCAATGGCCTCAACTCCCAGCTCGTCTTCCAAGACGAAGCCCTCCCCTTCAATTGCTCCACCACGCCGCAGCGTCGCGTCCCCGACCCAGGTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTGGCGTGGACCGAGACCGATTCTTTTCCCACCAGGGTGAAGATTTCCGCCGCAGTGTTTTCGGTCACACCCGGAATTGGAATGGGAATGGGACTGCGAGAACTGGAAGTGGGAAAGGATCGGATGAGGATGATGATGATGACGACGATGATGAAGATGAAGTCGATGATGGTGATGATGATGTTGAGGGGCTTGTTTCTTTGGATGATGTCAATAAGTGTACTAAAACTTCTATCCCCAACGATAGCAACAATGATAGAAGCGATCAGAGTAGTGAGGGCTTGAAGAATGGGACCAACAAATTGGGAAATGGGAAGCTTAAGCACCATTCTTCTTTTGGTGGAACTCTGTTAGTCAAGGATGGTTTAGTTGGCTCTTCAGGCAACAACACAGGAGCAACTCAGAGTGAGAACCATCCGCAGGGAAGGTTGGGGAACTACCCAAATGCTGTTACAATTGCAGAACCTGAAAGTGATGCTTATTATTCCCAGTATTTGCAAAGCACTGAAGTGTCTGCTTCTGGGCAGAAGGATTTGGGTATGGAAAATGGATGTGGTTTTGGGAGAAGGGATGTGTCGTTTTCAGGAGAGCCTGGAGAGTCTCTGAGAGCAATTCTCACTGACCCTGTGACGGGCGCTCTCATGGATGATGCAATGATATTGCCGTGTGGACATTCCTTTGGGAGCGGTGGAATACAACATGTTCTTAGAGTAAAATCTTGTTACTCATGCTCTCAGTCAGTTTCTGAAGACTCTATTGCTCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCCGCCGGGAAGAAGAATTAATATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTCTCATGGATACCACAAGAGGTCGAGGTGTTCAGTTTCCTTTCGCAGTGACTGATAGGGTAATTATCAAGGGGAACAAGAGGACACCGCAACGTTTTGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACACTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCGCTTGCGAAGGTTCCAAATGATGCAACATCAAAGACGATAACAAGGAAAATCACACCAAATTGGCTTTAG 1305 47.59 MSSEDINGLNSQLVFQDEALPFNCSTTPQRRVPDPGPKTRELCGFMDDKLFPGVDRDRFFSHQGEDFRRSVFGHTRNWNGNGTARTGSGKGSDEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCTKTSIPNDSNNDRSDQSSEGLKNGTNKLGNGKLKHHSSFGGTLLVKDGLVGSSGNNTGATQSENHPQGRLGNYPNAVTIAEPESDAYYSQYLQSTEVSASGQKDLGMENGCGFGRRDVSFSGEPGESLRAILTDPVTGALMDDAMILPCGHSFGSGGIQHVLRVKSCYSCSQSVSEDSIAQNLSLQAAVQAFRREEELIFYRSPKRRRERFEQDKGGYGDLTLMDTTRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATSKTITRKITPNWL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6986984 6991225 + CcPI632755_07g005440.1 Cco07g0544 183197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0544 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
Cco07g0544 434 MobiDBLite consensus disorder prediction 72 159 - -
Cco07g0544 434 ProSiteProfiles U-box domain profile. 252 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco07g0544 434 MobiDBLite consensus disorder prediction 175 199 - -
Cco07g0544 434 SUPERFAMILY RING/U-box 252 324 - -
Cco07g0544 434 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 8 425 - -
Cco07g0544 434 MobiDBLite consensus disorder prediction 122 150 - -
Cco07g0544 434 MobiDBLite consensus disorder prediction 93 116 - -
Cco07g0544 434 MobiDBLite consensus disorder prediction 175 196 - -
Cco07g0544 434 MobiDBLite consensus disorder prediction 74 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0544 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0544 Cco-Chr7:6986984 Cco11g0136 Cco-Chr11:1424737 4.30E-36 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco11g0188 . 2 723 Plant U-box Gene Family AT5G57035 53.9 2.5e-228 788.9
Cco07g0544 . 201 434 Plant U-box Gene Family AT5G05230 58.2 4.2e-69 258.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40