Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0562 | ATGGAGACCTCGCCTTCTAATTCCGATCCTTACTCCAATTCTTCTTCACCCACAACTGCTCGTACCTCCTCCAGATTTGGCCTCTCGCTCCCTTCCCTCAATTTCTTCCGTTCGCCTTTGTCTGTCATCTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCGTCATGAATCCGACCCTGTAATCAACGCCGCTGCCACTCCTGATTTGCGGGTTTATTCTCAAAATCAGAATCACTTGATCACCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCACAACCTCTTCTGGTAATACTATCCCCTCTGGGGAGGTTTCCATAAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCCAGTGGCTTGTTGCCAAATCAGGCTGGTTATGAGCAAAATGGCAGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGCGTCAACTGCTTCTTCATCTATTCAATCTGGAAGCACTCGTGTCGATGGAGAATCTGGAAATGGAATGGAAGAGAGTGTCAATAGAGATTCGTCTTACCAGAGATATGATATTCAGCAGGTTGCCAGATGGATTGAACAGATTCTTCCATTCTCTTTGCTATTGCTGATAGTCTTTATCCGTCAGCACTTAGAAGGTTTTTTCATCACAATTTGGATATCAGCTGTTATGTATAAGTCGAACGACATTGTCAAGAAACAGACTGCTCTAAAGGGAGAGAGGAAAATTTCTGTCCTTGCTGGAACTTCTATTGCATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGACGATCTTCTATACCCCTTAATCATGCTTCCACCAAAGACAGTACCACCTTTTTGGCATGCCTTGTTCATCATTTTGGTTAATGATACGATGGTGAGGCAGTTTGCTATGGCTCTCAAATGTTTTCTTCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGTCGGCAGGGTCAAATCTTAACTCTCGTGGAATACACTCTTCTATTGTACCGTGCATTATTACCAACACCTGTATGGTACCGATTCTTCTTGAATAAAGATCAAGGGAGCCTCTTTTCATCGCTAACAACAGGATTATATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTTGTTGCTGCATTTAAGGCTCTATCACGAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCAGGAGACCTCTGTGCCATTTGCCAGGAGAAGATGAATGCTCCAATCCTATTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAGAGAACTTGCCCTCTTTGCCGGGCACTGGTAAAGCCTGCAGAACTCCGAACATTTGGCGATGGATCAACCAGCTTACTCTTCCAGTTGTTTTAG | 1455 | 43.16 | METSPSNSDPYSNSSSPTTARTSSRFGLSLPSLNFFRSPLSVILDYSGILPTRAVRHESDPVINAAATPDLRVYSQNQNHLITTSSSSSSSSSSSSATTSSGNTIPSGEVSIRIIGSGEQDPSPSGLLPNQAGYEQNGRLPVSGDQPESPDEERVPLASTASSSIQSGSTRVDGESGNGMEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWCHSDDLLYPLIMLPPKTVPPFWHALFIILVNDTMVRQFAMALKCFLLIYYKNGRGHNFRRQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF | 484 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 7350062 | 7357980 | - | CcPI632755_07g005620.1 | Cco07g0562 | 183215 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0562 | 484 | MobiDBLite | consensus disorder prediction | 82 | 186 | - | - | |
Cco07g0562 | 484 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 13 | 484 | IPR044235 | GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro) | |
Cco07g0562 | 484 | SUPERFAMILY | RING/U-box | 416 | 466 | - | - | |
Cco07g0562 | 484 | MobiDBLite | consensus disorder prediction | 156 | 186 | - | - | |
Cco07g0562 | 484 | CDD | RING-HC_RNFT1-like | 421 | 461 | - | - | |
Cco07g0562 | 484 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 397 | 470 | IPR013083 | - | |
Cco07g0562 | 484 | MobiDBLite | consensus disorder prediction | 82 | 110 | - | - | |
Cco07g0562 | 484 | Pfam | Ring finger domain | 422 | 461 | IPR001841 | - | |
Cco07g0562 | 484 | SMART | ring_2 | 423 | 460 | IPR001841 | - | |
Cco07g0562 | 484 | ProSiteProfiles | Zinc finger RING-type profile. | 423 | 461 | IPR001841 | - | |
Cco07g0562 | 484 | ProSitePatterns | Zinc finger RING-type signature. | 438 | 447 | IPR017907 | - | |
Cco07g0562 | 484 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0788 | Cco-Chr4:23149302 | Cco07g0562 | Cco-Chr7:7350062 | 3.00E-154 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0562 | - | - | - | 0.0 |