Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0597 ATGCCAATGGCGAAAAAGGATGAACCGGAGCTTCGGAGCTCCGGCAAGAGGCTAAAATGCTCTAAGCACGATGATGAACACCTCGGTAATGAAGAAGAAGAAGAGCAGGTGAGCGAGCTTCCATTGAAACCGGGGCTTTTCTTCTACCCAATGACGCCAACTTCCTTCGTGGTCTCTGATGCTCTCGAGCCCGATTTTCCAATCATCTACGTCAACAAAGTCTTCGAGATCTTCACTGGATACCGTGCCGATGAGGTCCTCGGCCAGAATTGTCGGTTCTTACAATATAGAGATCCTCGTGCACAAAGGCGTCACCCTTTGGTAGATCCGGTGGTTGTTTCTGAAATCAGAAGATGTCTTGAGGAAGGTGTTGAATTCCAAGGTGAGCTCCTCAATTTCAGAAAGGATGGCACTCCTATGGTGAACAGGTTACGGCTAGCACCCATACATGATGATGATGGGACTGTAACACACATAATAGGAATTCAAGTGTTTTCTGAGACAAAGATAGACCTTAATCGGTTGTCATATCCCGTCTTCAAAGAAAATTATGATATAAAATATGATCTATCAGGCAAAAGTGCTCATCTGATTGATCAATCACCGTTTGGCCACCATAAAGAAATCTGTAGGATACTACAGCTTTCAGATGAAGTCTTGGCCCATAACATTTTATCACGCTTAACACCACGAGATGTTGCATCTGTCGGATCAGTGTGCCGAAGGATTCGTCAATTGACGAAGAATGAGCATTTAAGGAAGATGGTATGTCAGAATGCATGGGGAAGAGAAGTGACTGGAACATTGGAACAAATGACAAAGAAACTCGGTTGGGGGCGCTTGGCCAGGGAACTTACAACTCTTGAAGCTGTATGTTGGAGAAAACTGACAGTTGGGGGAGCTGTGGAGCCTTTACGTTGCAACTTTAGTGCTTGTGCGGCAGGTAATCGACTTGTATTATTTGGTGGAGAAGGAGTCAATATGCAACCCATGGATGATACCTTTGTTCTCAATCTTGATGCTGCAAATCCCGAGTGGCGCAGAGTCAGTGTGAAATCCTCCCCACCTGGACGTTGGGGCCACACTCTATCATGTTTGAATGGTTCTTGGTTAGTCGTTTTTGGTGGATGTGGCAGTCAAGGATTGCTCAACGACGTGTTTGTACTCGATTTGGATGCGCAGCAACCAACATGGAAAGAAATCTCTGGTGGAGCTCCTCCATTGCCTAGATCCTGGCATAGCTCCTGTATGATCGAAGGTTCGAAACTGGTTGTTTCAGGTGGATGCACAGATGCCGGTGTGCTTCTCAGTGACACATACTTGTTGGATCTAACAACAGATAAGCCAACCTGGAGAGAGATTCCCACATCCGGGACACCCCCATCTAGATTGGGACATTCTCTTTCAGTTTATGGTCGGACAAAGATTCTAATGTTTGGTGGACTTGCCAAGAGCGGGCACTTACGCTTACGATCAGGCGAGGCGTACACCATAGATTTAGAAGAGGAAGAACCCCAGTGGAGGCAACTTGAGTGCAGTGCATTCACTGGCATTGGCGGTCAGAGTGCTGTGGTTCCTCCACCAAGACTCGATCATGTAGCAGTCAGCATGCCTTGTGGAAGGATTATCATTTTCGGTGGCTCCATTGCTGGGCTACATTCACCTTCTCAACTTTTCCTTTTGGATCCAGCCGAGGAGAAGCCGTCATGGAGGATTCTCAACGTTCCTGGACAACCACCTAAATTTGCTTGGGGCCACAGTACTTGTGTGGTTGGAGGTACAAGAGTTTTGGTATTGGGCGGCCACACCGGGGAAGAATGGATACTCAATGAATTACACGAACTCTGCTTGGCTAGCAGGCAAGATTCAGATCTTTGA 1878 46.96 MPMAKKDEPELRSSGKRLKCSKHDDEHLGNEEEEEQVSELPLKPGLFFYPMTPTSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLNRLSYPVFKENYDIKYDLSGKSAHLIDQSPFGHHKEICRILQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTGTLEQMTKKLGWGRLARELTTLEAVCWRKLTVGGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRSWHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEEEEPQWRQLECSAFTGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8182667 8185471 + CcPI632755_07g005970.1 Cco07g0597 183250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0597 625 NCBIfam PAS domain S-box protein 67 162 IPR000014 -
Cco07g0597 625 MobiDBLite consensus disorder prediction 1 38 - -
Cco07g0597 625 Pfam PAS domain 62 163 IPR000014 -
Cco07g0597 625 Pfam F-box-like 221 258 IPR001810 GO:0005515(InterPro)
Cco07g0597 625 CDD PAS 52 162 IPR000014 -
Cco07g0597 625 FunFam Adagio protein 1 46 174 - -
Cco07g0597 625 Gene3D - 206 256 - -
Cco07g0597 625 CDD F-box_AtADO-like 212 257 - -
Cco07g0597 625 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 51 620 - GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007623(PANTHER)|GO:0009637(PANTHER)|GO:0019005(PANTHER)
Cco07g0597 625 Pfam Galactose oxidase, central domain 420 471 - -
Cco07g0597 625 Pfam Galactose oxidase, central domain 371 416 - -
Cco07g0597 625 Gene3D - 509 623 IPR015915 GO:0005515(InterPro)
Cco07g0597 625 ProSiteProfiles PAS repeat profile. 68 123 IPR000014 -
Cco07g0597 625 SUPERFAMILY PYP-like sensor domain (PAS domain) 63 163 IPR035965 -
Cco07g0597 625 Gene3D PAS domain 50 174 - -
Cco07g0597 625 SUPERFAMILY F-box domain 207 264 IPR036047 GO:0005515(InterPro)
Cco07g0597 625 Gene3D - 287 508 IPR015915 GO:0005515(InterPro)
Cco07g0597 625 FunFam Putative LOV domain-containing protein 489 621 - -
Cco07g0597 625 Pfam Kelch motif 530 577 IPR011498 GO:0005515(InterPro)
Cco07g0597 625 SMART pac_2 127 168 IPR001610 -
Cco07g0597 625 FunFam Putative LOV domain-containing protein 283 488 - -
Cco07g0597 625 SUPERFAMILY Kelch motif 292 511 IPR015915 GO:0005515(InterPro)
Cco07g0597 625 SUPERFAMILY Kelch motif 525 615 IPR015915 GO:0005515(InterPro)
Cco07g0597 625 Pfam Galactose oxidase, central domain 306 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0597 K12116 - - csv:101222712 1236.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0597 Cco-Chr7:8182667 Cco11g1244 Cco-Chr11:24699146 4.00E-221 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34