Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0636 ATGCGAGGAAGAGGAGGTCATTGGTGGCCCATGCCCAATGATTTGGCGTTGGCGGGGAAGAAGAAAGAAGAGGCCACAAGAGTAAGAGATCACTGGTCAATTGATCTTTTTACTAGTGTCTATGTGTGGTATGCCGTGGTATTGAAAGAGAGCTTTAAAATCTATTGTGCTATTAACGATGGAATTATAAATCTCGTTGACAAGTTTTTTGAGATGCCAAGACATGAGGCTATCAAAGCCCTTGATATCTATAAAAGAGCTGGCCAACAGGCAGGAAGCCTATCAGATTTCTATGATATTTGCAAAGGGTTAGAACTTGCTCGGAATTTCCAGTTTCCTGTTTTAAGAGAGCCTCCACAGTCATTTCTTAATACGATGGAAGAGTATATTAGGGAGGCACCACGAATGGTTACAGTACCAAATGAACCACTGCTGCAACTTACCTACAAGCCGGAAGAATCTCTTTCCGAGGATCAAAACTTACCCACTGATCAGCCGGAGGCTTCTCCTTCAGATGATCTTTCTATTACTCCTGTTGAAACGGCTCCACCACCGCCTCCAGCACCAGCTCCTGCTCCTGAAAGCCATGCAGAGACTGGAGATTTATTGGGATTGAGTCTTGCTACCACTGAAGTATCTGAAATTGAGGAGAGAAATGCTTTGGCTTTAGCCATAGTTCCTTCTGGTGATACAGCAACACCCACTTTTCATTCCAATGGTGCACATACAAATGATTTTGATCCTACTGGTTGGGAGCTTGCCTTGGTCACCACTCCAAGTAGTAACCTTTCATCAACTAATGAGAGACAACTGGCTGGTGGATTGGACACACTTACTCTCGATAGTTTATATGATGAAGGTGCATATAGAGCTTCTCTACAGCCCCTGTACGGTAAGCCTGCACCAAATCCGTTTGAGGTGCAAGATCCGTTTGCATATTCGAACGCCATCGCTCCACCTCCATCAGTTCAAATGGCACCACTACCTCAGCAGCAGGCCAATCCTTTTGGTCCTTTCCAACCTACCTTCGCACAGCAGCAACAGCCCTTTTCAATGGACCCAACAAATCCTTTTGGTGATGCGGGTTTTGGAGCATTCCCTGCTCCTAACCACCATACTGTACCACTGCCTGCAAGCAACCCGTTCGGAAGCACAGGCCTGCTGTAG 1167 46.02 MRGRGGHWWPMPNDLALAGKKKEEATRVRDHWSIDLFTSVYVWYAVVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALDIYKRAGQQAGSLSDFYDICKGLELARNFQFPVLREPPQSFLNTMEEYIREAPRMVTVPNEPLLQLTYKPEESLSEDQNLPTDQPEASPSDDLSITPVETAPPPPPAPAPAPESHAETGDLLGLSLATTEVSEIEERNALALAIVPSGDTATPTFHSNGAHTNDFDPTGWELALVTTPSSNLSSTNERQLAGGLDTLTLDSLYDEGAYRASLQPLYGKPAPNPFEVQDPFAYSNAIAPPPSVQMAPLPQQQANPFGPFQPTFAQQQQPFSMDPTNPFGDAGFGAFPAPNHHTVPLPASNPFGSTGLL 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10068496 10072629 + CcPI632755_07g006360.1 Cco07g0636 183289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0636 388 MobiDBLite consensus disorder prediction 152 198 - -
Cco07g0636 388 MobiDBLite consensus disorder prediction 369 388 - -
Cco07g0636 388 Gene3D ANTH domain 39 146 IPR014712 GO:0005545(InterPro)|GO:0030136(InterPro)|GO:0030276(InterPro)|GO:0048268(InterPro)
Cco07g0636 388 MobiDBLite consensus disorder prediction 179 193 - -
Cco07g0636 388 Pfam ANTH domain 46 132 IPR011417 GO:0005543(InterPro)
Cco07g0636 388 PANTHER CLATHRIN ASSEMBLY PROTEIN 44 343 IPR045192 GO:0000149(PANTHER)|GO:0005545(PANTHER)|GO:0005546(PANTHER)|GO:0005905(PANTHER)|GO:0006900(PANTHER)|GO:0030136(PANTHER)|GO:0032050(PANTHER)|GO:0048268(InterPro)|GO:0072583(PANTHER)|GO:0072583(InterPro)
Cco07g0636 388 MobiDBLite consensus disorder prediction 152 176 - -
Cco07g0636 388 SUPERFAMILY GAT-like domain 42 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0636 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0636 Cco-Chr7:10068496 Cco11g1212 Cco-Chr11:24000149 2.80E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g460 . . . . . . . . Cmo04g01091 . Cma04g01013 Cma04g00065 Car04g00949 Car04g00062 . . . . . . . . . . Cla07g00570 Cam07g0596 Cec07g0663 Cco07g0636 Clacu07g0599 Cmu07g0633 Cre07g0972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01148 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001235 1 2 1 3 2 3 4 3 2 2 2 2 3 1 2 4 3 4 4 3 2 2 2 2 3 3 2 6 2 2 77