Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0645 ATGAACAATCGGGCTGGACTCCTTCGAATTCGCCTGCTTCGAGGCCACAATCTCGCCATTCGCGATGCTCCAACTCGTAGCAGCGATCCCTACGTCGTCATCTCCTGCGCTAACCAGAAATTCAAATCTCGCGTGGTGAAGAAAAACTGCAATCCAGAATGGAACGAGGAATTCACATTTTCGATTACAGATGCCAACACGGCAATCAAATTGGCAGTGTTCGACAAAGATAGATTCACAAAGGACGATGGAATGGGGGATGCGGAGATCGACATAAAACCGTACATAGAGTGTTTGAATATGGGATTAGAGAATCTGCCAAATGGTTGTGTGGTGAAAAGGGTTCAACCAAGCAGATCAAACAGCCTTGCAGATGAGAGTTCTTGTGTTTGGAACGATGGTAAGATCATCCAAGACATGACTCTCAGATTGCAGAATGTTGAATGTGGTGAAATCATGATTCAGCTTCAGATGTTCAATGTTTCGATTTTCAAAGGCCTAAGAACCTACTCTTTAGCCTGA 522 44.64 MNNRAGLLRIRLLRGHNLAIRDAPTRSSDPYVVISCANQKFKSRVVKKNCNPEWNEEFTFSITDANTAIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLENLPNGCVVKRVQPSRSNSLADESSCVWNDGKIIQDMTLRLQNVECGEIMIQLQMFNVSIFKGLRTYSLA 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10394361 10395644 - CcPI632755_07g006450.1 Cco07g0645 183298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0645 173 CDD C2_ArfGAP 6 150 - -
Cco07g0645 173 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Cco07g0645 173 PRINTS C2 domain signature 48 61 IPR000008 -
Cco07g0645 173 PRINTS C2 domain signature 24 36 IPR000008 -
Cco07g0645 173 PRINTS C2 domain signature 69 77 IPR000008 -
Cco07g0645 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 162 IPR044562 -
Cco07g0645 173 Gene3D C2 domain 2 165 IPR035892 -
Cco07g0645 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 161 IPR035892 -
Cco07g0645 173 SMART C2_3c 7 104 IPR000008 -
Cco07g0645 173 Pfam C2 domain 6 94 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0662 Cco-Chr1:6774740 Cco07g0645 Cco-Chr7:10394361 2.80E-38 dispersed
Cco05g1287 Cco-Chr5:12906163 Cco07g0645 Cco-Chr7:10394361 6.00E-47 dispersed
Cco07g0645 Cco-Chr7:10394361 Cco06g1624 Cco-Chr6:26838525 3.00E-49 transposed
Cco07g0645 Cco-Chr7:10394361 Cco01g1650 Cco-Chr1:29240734 3.00E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0645 - - - 0.0