Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0672 ATGGAGCTAAGGAGCTATGGGGGACAGGACAAAGTGGCTTGGTCCTTTGATTCTTTCAAGCAGGGTGCTTTTGTGGGGCATTTGTTGGCAAGGAACCAAAGAGCATTCGAAGGGCAAGCACAAAGCATCCTTGTAGCTGAAAGGGTGGCACTGAACTTTATGCAGAGAATGAGTGGAATTGCAACTTTAACTAAGCCGCGTGTTGTGCTTGCATGGGCTGGGCACCTATGCGCACTTGATGTTGTTGGGGGCCTCACCCCACTAACATCCCCTATAGTGGTCAATTTACCATTGGCCTGGGGTCTGCCTCTTCAATGGAATCATTTCACAATGAATTCCTTCTTCATTGTTTTAATTTTAGTTGAGGAGCCGCCTCGAGTGGGGTCCACCTGCCAAAGAACTACATTTAACCCGGGGTTTTGGTACGCCATTAATGACTCGGATGAAAGCTTCGAAGAAGCTGCAAATTCTCCTCTCAGTAGCCCGAAATCCAAGCAAGAAGACCGATCATTTCAGAATTTACCAGACAATTCTCCTCAATCTCGATCAGGCAAAATCTCCTCTGCTAAGAAATCATTTGTTCCAACATGTTTCCTTGACACAAACAGGATCAGGACTCGGGGGAGACGATTGGACGGCTTGAGTAGTGCGATGGCAGATGCTGCAAGCCCAGCACGCATTCTGGAAACGAGAAAAACTGCTCCAGGTTTACGTTTGGTGGATAAGTGGGCGGTATTGATTGGTGGAGGCCAAAATCACCGGATGGGTTTATTTGATATGGTGTTGATAAAAGATAATCATATATCAGCAGCTGGAGGCATCTCAAATGCCATTAAATCTGTTGACTTGTATCTGCAAGAAAGAAATCTTAAAATGAACGTTGAGGTTGAGACCAGGACTCTTGAGGAAGTTCATGAGGTATTACACTATGCAACTCAAAACAATACATTCTTAACTAGGATGATGTTGGATAATATGGTAGTTCCACTCCCAAGTGGCGATGTTGATGTGTCCATGCTTAAGGAGGCTGTAGACATCATCAATGGGAGATTTGAGACTGAGGCTTCAGGAAATATTACTCTGCAAACTATACAGAAAATTGGACAAACTGGGGTTACTTACATATCCAGTGGTGCGCTGACACATTCTTTGGAAGACGTACAAAACGAGCCTGATTCTAAATCCGCACGTATTTGGGATCAACCAGCCAGGTGA 1215 44.94 MELRSYGGQDKVAWSFDSFKQGAFVGHLLARNQRAFEGQAQSILVAERVALNFMQRMSGIATLTKPRVVLAWAGHLCALDVVGGLTPLTSPIVVNLPLAWGLPLQWNHFTMNSFFIVLILVEEPPRVGSTCQRTTFNPGFWYAINDSDESFEEAANSPLSSPKSKQEDRSFQNLPDNSPQSRSGKISSAKKSFVPTCFLDTNRIRTRGRRLDGLSSAMADAASPARILETRKTAPGLRLVDKWAVLIGGGQNHRMGLFDMVLIKDNHISAAGGISNAIKSVDLYLQERNLKMNVEVETRTLEEVHEVLHYATQNNTFLTRMMLDNMVVPLPSGDVDVSMLKEAVDIINGRFETEASGNITLQTIQKIGQTGVTYISSGALTHSLEDVQNEPDSKSARIWDQPAR 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11486841 11512438 + CcPI632755_07g006720.1 Cco07g0672 183325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0672 404 Pfam Quinolinate phosphoribosyl transferase, C-terminal domain 220 384 IPR002638 GO:0004514(InterPro)|GO:0009435(InterPro)
Cco07g0672 404 SUPERFAMILY Nicotinate/Quinolinate PRTase C-terminal domain-like 223 387 IPR036068 GO:0009435(InterPro)
Cco07g0672 404 Gene3D Aldolase class I 221 382 IPR013785 -
Cco07g0672 404 SUPERFAMILY Nicotinate/Quinolinate PRTase N-terminal domain-like 36 59 - -
Cco07g0672 404 MobiDBLite consensus disorder prediction 153 189 - -
Cco07g0672 404 FunFam Nicotinate-nucleotide pyrophosphorylase [carboxylating] 223 383 - -
Cco07g0672 404 Gene3D - 17 70 IPR037128 GO:0016763(InterPro)
Cco07g0672 404 PANTHER NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] 34 69 IPR027277 GO:0004514(PANTHER)|GO:0005737(PANTHER)|GO:0009435(PANTHER)|GO:0034213(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0672 K00767 - - csv:101208793 308.916
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g415 . . . . . . Bma14g01593 . Cmo04g01079 . Cma04g01001 . Car04g00939 . . . . . . . . . . . Cla07g00598 Cam07g0626 Cec07g0692 Cco07g0672 Clacu07g0630 Cmu07g0656 Cre07g1003 Cone13ag0769 . . . Lsi04g01137 . . Cme10g01500 . Blo11g00734 . . Bpe11g01607 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01042 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003846 2 3 1 1 2 2 1 2 2 0 2 1 1 1 1 1 2 1 1 2 1 1 1 1 0 1 1 6 2 1 44