Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0680 ATGGCCGGGATTGTCGCCGGCGACAGCGACAGTGCACCGGCTTTGGCTCTACTGGACTTTGTTCGCGATGTTGTTCGAATGTCGGCGGGAACGAACACTGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGTCGGATCGTGCTTTTGACGCATCTGTTTGAGGAAATCAGGGACTTCAATGGCGTCCAATTTCGACCTGTTGATGCATCTTCGTCTTCTTCTTCTTCTTGTGGCGCTGTTACTGTGAGGGATTCGTCTCAGTTTCCATGGCTTTGTGATTTAGTGACGGCATTGAAGGATACTAAGCGCCTCATTTTCATCGCTTCTACTTTCCGGTCCTGCGGCTCTTCTTCTGAAGAAGTTGCCAAGAAGATACTCTTTCAATTCCAATGTGTGACGTGGAAGTTAGAGAAGGCATTGGGCAATCTTCCATATGATCGCCTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCCCAATTGAGAAGAGCAGCAGAAAAATATGGGTCTCTGACTGCAATTCCACCATCTGTTGTTCAATCTCAGTTGTTGAAGAAAAATGTGGATCTCTTAAATTTGAACAACTGGGTTGATAACTTTGATGTTGAGGAGAATGGTATTGTTGATCATGAGATTACAGTGAAATTTGATGCATTTCCAAATTGTAGAGGGTTGATGAATGGCGGTGTGGATCAATTGATTTTCAAAGGACTAGAGAAACTTCCATCCTCTTCAGAGGCTTGTTCTAATGGACAGGATAATGACTCTGCCAGAAAGAGTGGGGACCAGGTGAAGAACCCAGATGGAGTTTCAATCCCTGATGATTTTCTATGCCCCATATCCTTGGAAATAATGAGAGATCCTGTTATTGTGTCCACAGGCCAGACGTATGAGAGATCTTATGTACAGAGGTGGATAGATTGTGGGAATACTACTTGCCCCAAAACTCAGCAGAAGCTCCAAAATTTGACTCTCACCCCAAATTATGTGTTGCGAAGTCTCATTAGTCAATGGTGTGTTAATAACAATATTGAGCAACCTACGGGATTAACCAATGGGAAGATCAAAAAGTGTGACGGATCATACCGTGACGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTCCGCAAGCTAACTAGCCATTCGATTGAGGAGCGGCGAGCATCTGTGACTGAACTTCGATCTCTATCTAAAAGAAGCACGGATAATAGAATACTGATTGCTGAAGCAGGAGCAATTCCTGCATTGGTCAATCTATTAACTTCTGATGACGTTTTAATACAAGAAAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAACAAGGGATTGATTATGCTTGCTGGTGCAATACCTTCCATTGTTCAAGTTCTTAGAGTTGGAAGTATGGAAGCAAGAGAAAATGCAGCAGCAACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCTATTCCAGCTCTTGTGGATTTACTTGAAAATGGAAGCTCAAGAGGAAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGCATTTATCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTATGGACTCAGTTAACTCGATGATCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGACCTTCTGAGGACCGGATTGCCTCGCAACAAGGAAAATGCTGCTGCTATTTTGCTTGCTTTGTGTAAGCGAGATACCGACAACCTTTATTGTATAAGTAGGCTTGGCGCTGTGATTCCACTGACAGAGCTTGCCAAGAGTGGAACGGAGAGAGCGAAAAGGAAGGCTACTTCATTGTTGGAGCATCTTCGAAAACTGCAGCAGCTATAG 1974 43.92 MAGIVAGDSDSAPALALLDFVRDVVRMSAGTNTGEVFKKDCTDLVRRIVLLTHLFEEIRDFNGVQFRPVDASSSSSSSCGAVTVRDSSQFPWLCDLVTALKDTKRLIFIASTFRSCGSSSEEVAKKILFQFQCVTWKLEKALGNLPYDRLDISEEVQEQVELVRAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDLLNLNNWVDNFDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQLIFKGLEKLPSSSEACSNGQDNDSARKSGDQVKNPDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNNNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLMDSVNSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLYCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11764052 11767209 - CcPI632755_07g006800.1 Cco07g0680 183333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0680 657 Coils Coil 637 657 - -
Cco07g0680 657 FunFam RING-type E3 ubiquitin transferase 275 351 - -
Cco07g0680 657 Gene3D - 556 656 IPR011989 -
Cco07g0680 657 FunFam RING-type E3 ubiquitin transferase 361 454 - -
Cco07g0680 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
Cco07g0680 657 FunFam RING-type E3 ubiquitin transferase 557 656 - -
Cco07g0680 657 Pfam Armadillo/beta-catenin-like repeat 407 446 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 SUPERFAMILY ARM repeat 368 651 IPR016024 -
Cco07g0680 657 Gene3D - 360 453 IPR011989 -
Cco07g0680 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 FunFam RING-type E3 ubiquitin transferase 455 555 - -
Cco07g0680 657 SMART Ubox_2 281 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco07g0680 657 SMART arm_5 530 570 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 SMART arm_5 613 653 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 SMART arm_5 448 488 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 SMART arm_5 407 447 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 SMART arm_5 571 611 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 SMART arm_5 489 529 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 542 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 MobiDBLite consensus disorder prediction 251 275 - -
Cco07g0680 657 SUPERFAMILY RING/U-box 274 351 - -
Cco07g0680 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515(InterPro)
Cco07g0680 657 Pfam U-box domain 278 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco07g0680 657 Coils Coil 153 173 - -
Cco07g0680 657 PANTHER U BOX DOMAIN-CONTAINING 36 653 - -
Cco07g0680 657 CDD RING-Ubox_PUB 279 331 IPR045210 -
Cco07g0680 657 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco07g0680 657 Gene3D - 454 555 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2163 Cco-Chr2:34366997 Cco07g0680 Cco-Chr7:11764052 8.80E-09 dispersed
Cco05g2381 Cco-Chr5:32309586 Cco07g0680 Cco-Chr7:11764052 1.20E-63 dispersed
Cco06g0985 Cco-Chr6:13377838 Cco07g0680 Cco-Chr7:11764052 1.80E-16 dispersed
Cco07g0680 Cco-Chr7:11764052 Cco11g0617 Cco-Chr11:6635883 9.70E-40 dispersed
Cco07g0680 Cco-Chr7:11764052 Cco01g0639 Cco-Chr1:6553085 5.00E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0680 - - - 0.0