Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0716 ATGCTCCAGAGCTCCGTTTTGTCTTTCATTTCGATTCCCACTTCTTTTCGCTTTGAAAACCATCAAGGCATCAACACACGCCTCTGTGGACCCCTTCACAAGAATATGATTGAAAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTAATAGGTAGAGGGAGCTATGGAGTTGTTGCATCTGCCATAGACACTCATTCTGGTGAGAAAGTTGCCATCAAGAAGATAAATAATGTCTTCGAGCATGTTTCTGATGCCACACGGATTCTAAGAGAAGTTAAGCTCCTTAGGTTTCTTCGTCATCCTGATATTGTTGATATAAAACATATAATGCTCCCTCCATCCAGAAGGGATTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAATGATGATCTCACTCCTCAGCATCATCAGTTTTTCTTGTATCAACTTCTTAGAGCCTTGAAATATATACATTCAGCGCATGTGTTCCATAGAGATCTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCTCGTGCATCTTTTAGTGATACCCCATCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCTTTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATTTTTGCTGAAATGTTGGCAAGCAAGCCATTGTTTCCTGGGAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACATACTTGGTACTCCTTCAGCTGAATGTATTGCGAAGATTCGGAATGAAAAGGCTAAAAGGTATTTGAGTGGCATGAGAAAAAAGAATCCAATACCTCTGTCTAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCGTTTACTTGAACGCCTGCTTGCATTTGATCCTGAGGATCGTCCTTCTGCAGAGGAGGCATTAGCTGATCCTTATTTCCATGGACTGGCAAATCTGAAGGATGAACCATCTAGGCAACCCATTCCAAAACTCGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTCAGAGAGCTTATCTATAGAGAAATTTTAGAGTATCACCCTCAAATGCTACAGGAATACCTTCAAGGTTCTGGGAGTCACTTTGTGTATCCCAGTGGAATTGATCGATTCAAGCGACAATTTGATCATCTTGAGGAACGTTCTGGTAAAGGTGAGAGAGGCAGTCCAGTTCTAAGGAAGTATGCCTCCTTGCCTAGGGAGCGAATTTATATGCCAATAAATGAAGATGATGATGAAAAACGTAAAACAGAACAACGAAATGCAGCTTCAGCTGAACATGTAGCGCTTCAAAGCCCTCCTGGACCTGCTTATTCATTAACTGCTCGGAACGGTTCTGTTCAATGGTTGCACGGAAGGAAAGAATACAACATTGCTAGCCTTCCTCAGATTCTTAATTTGTAA 1521 40.83 MLQSSVLSFISIPTSFRFENHQGINTRLCGPLHKNMIEKEFFTEYGEATQYEIEEVIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREVKLLRFLRHPDIVDIKHIMLPPSRRDFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDTPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLASKPLFPGKSVVHELDLITDILGTPSAECIAKIRNEKAKRYLSGMRKKNPIPLSRKFPNADPLALRLLERLLAFDPEDRPSAEEALADPYFHGLANLKDEPSRQPIPKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSGSHFVYPSGIDRFKRQFDHLEERSGKGERGSPVLRKYASLPRERIYMPINEDDDEKRKTEQRNAASAEHVALQSPPGPAYSLTARNGSVQWLHGRKEYNIASLPQILNL 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13272636 13278391 + CcPI632755_07g007160.1 Cco07g0716 183369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0716 506 ProSiteProfiles Protein kinase domain profile. 51 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0716 506 Pfam Protein kinase domain 51 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0716 506 Gene3D Phosphorylase Kinase; domain 1 67 388 - -
Cco07g0716 506 ProSitePatterns MAP kinase signature. 86 189 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0716 506 FunFam Mitogen-activated protein kinase 137 365 - -
Cco07g0716 506 SUPERFAMILY Protein kinase-like (PK-like) 48 347 IPR011009 -
Cco07g0716 506 FunFam Mitogen-activated protein kinase 38 143 - -
Cco07g0716 506 Gene3D Transferase(Phosphotransferase) domain 1 137 365 - -
Cco07g0716 506 ProSitePatterns Protein kinases ATP-binding region signature. 57 81 IPR017441 GO:0005524(InterPro)
Cco07g0716 506 CDD STKc_TDY_MAPK 50 387 - -
Cco07g0716 506 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 48 383 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco07g0716 506 FunFam Mitogen-activated protein kinase 366 388 - -
Cco07g0716 506 SMART serkin_6 51 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0716 506 MobiDBLite consensus disorder prediction 444 461 - -
Cco07g0716 506 MobiDBLite consensus disorder prediction 444 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0995 Cco-Chr3:15005752 Cco07g0716 Cco-Chr7:13272636 5.20E-254 dispersed
Cco07g0716 Cco-Chr7:13272636 Cco09g2440 Cco-Chr9:38590643 1.10E-184 dispersed
Cco07g0716 Cco-Chr7:13272636 Cco06g1633 Cco-Chr6:26950374 1.30E-206 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86964 PF00069 Pkinase 1.10E-67 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0716 - - - 0.0