Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0723 ATGGCAATTTTACCCACAACCTCTTCAAGATTGGATCTCTCCATCTCTGTACCAGGCTTCAATTCATTCTCATCACCACTTCCTCCATCTGTAGGGAGAGATTTGGACATGAACAAAGCTCCAGATGAAGAGGAATGGATGATGGGAAGTATGGAGGAAGATGAAGAAAATAACAATGGAAGCAATAATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTTCGACAAAATCATACTTTAAACCCAAAACAGAAGGAGACTTTGGCAGAAGTGTTGAAGTTGAAGCCAAGGCAGGTTGAAGTTTGGTTTCAGAATCGAAGGGCCAGGAGCAAGTTAAAGCAAACAGAGATGGAATGTGAGTATTTGAAAAGATGGTTCGGGTTATTGACAGAACAGAACAAGAGACTGCAGAAGGAGGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACGGTGATTTCACCGCACAGCTGCGAGCCGCTGCCAGCGTCGAATCTCACAATGTGCCCACGCTGCGAGCGCGTGACAACCACAGCCCTCGACAAGACCCGCATTGTCGTTTAA 591 46.87 MAILPTTSSRLDLSISVPGFNSFSSPLPPSVGRDLDMNKAPDEEEWMMGSMEEDEENNNGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13656262 13661834 + CcPI632755_07g007230.1 Cco07g0723 183376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0723 196 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0723 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 188 IPR050762 -
Cco07g0723 196 SMART halz 121 164 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0723 196 FunFam Homeobox-leucine zipper protein 18 50 126 - -
Cco07g0723 196 SMART HOX_1 63 125 IPR001356 GO:0003677(InterPro)
Cco07g0723 196 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco07g0723 196 CDD homeodomain 64 122 IPR001356 GO:0003677(InterPro)
Cco07g0723 196 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Cco07g0723 196 Gene3D - 57 129 - -
Cco07g0723 196 Coils Coil 134 154 - -
Cco07g0723 196 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677(InterPro)
Cco07g0723 196 Pfam Homeodomain 65 119 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0634 Cco-Chr1:6447626 Cco07g0723 Cco-Chr7:13656262 2.90E-57 dispersed
Cco07g0723 Cco-Chr7:13656262 Cco10g0785 Cco-Chr10:14746659 6.90E-34 dispersed
Cco07g0723 Cco-Chr7:13656262 Cco09g0363 Cco-Chr9:3298066 1.10E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59622 PF00046 Homeodomain 1.10E-16 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0723 K09338 - csv:101222713 369.007