Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0723 | ATGGCAATTTTACCCACAACCTCTTCAAGATTGGATCTCTCCATCTCTGTACCAGGCTTCAATTCATTCTCATCACCACTTCCTCCATCTGTAGGGAGAGATTTGGACATGAACAAAGCTCCAGATGAAGAGGAATGGATGATGGGAAGTATGGAGGAAGATGAAGAAAATAACAATGGAAGCAATAATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTTCGACAAAATCATACTTTAAACCCAAAACAGAAGGAGACTTTGGCAGAAGTGTTGAAGTTGAAGCCAAGGCAGGTTGAAGTTTGGTTTCAGAATCGAAGGGCCAGGAGCAAGTTAAAGCAAACAGAGATGGAATGTGAGTATTTGAAAAGATGGTTCGGGTTATTGACAGAACAGAACAAGAGACTGCAGAAGGAGGTGGAGGAGCTGAGGGCAATGAAGGTGGCGCCGCCGACGGTGATTTCACCGCACAGCTGCGAGCCGCTGCCAGCGTCGAATCTCACAATGTGCCCACGCTGCGAGCGCGTGACAACCACAGCCCTCGACAAGACCCGCATTGTCGTTTAA | 591 | 46.87 | MAILPTTSSRLDLSISVPGFNSFSSPLPPSVGRDLDMNKAPDEEEWMMGSMEEDEENNNGSNNPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTALDKTRIVV | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 13656262 | 13661834 | + | CcPI632755_07g007230.1 | Cco07g0723 | 183376 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0723 | 196 | Pfam | Homeobox associated leucine zipper | 121 | 155 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0723 | 196 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 50 | 188 | IPR050762 | - | |
Cco07g0723 | 196 | SMART | halz | 121 | 164 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0723 | 196 | FunFam | Homeobox-leucine zipper protein 18 | 50 | 126 | - | - | |
Cco07g0723 | 196 | SMART | HOX_1 | 63 | 125 | IPR001356 | GO:0003677(InterPro) | |
Cco07g0723 | 196 | ProSitePatterns | 'Homeobox' domain signature. | 96 | 119 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco07g0723 | 196 | CDD | homeodomain | 64 | 122 | IPR001356 | GO:0003677(InterPro) | |
Cco07g0723 | 196 | SUPERFAMILY | Homeodomain-like | 48 | 122 | IPR009057 | - | |
Cco07g0723 | 196 | Gene3D | - | 57 | 129 | - | - | |
Cco07g0723 | 196 | Coils | Coil | 134 | 154 | - | - | |
Cco07g0723 | 196 | ProSiteProfiles | 'Homeobox' domain profile. | 61 | 121 | IPR001356 | GO:0003677(InterPro) | |
Cco07g0723 | 196 | Pfam | Homeodomain | 65 | 119 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0634 | Cco-Chr1:6447626 | Cco07g0723 | Cco-Chr7:13656262 | 2.90E-57 | dispersed | |
Cco07g0723 | Cco-Chr7:13656262 | Cco10g0785 | Cco-Chr10:14746659 | 6.90E-34 | dispersed | |
Cco07g0723 | Cco-Chr7:13656262 | Cco09g0363 | Cco-Chr9:3298066 | 1.10E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59622 | PF00046 | Homeodomain | 1.10E-16 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0723 | K09338 | - | csv:101222713 | 369.007 |