Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0763 ATGTCTCTAGTTGGAAAGCTTGTGAGTGAATTAGAGATCAATGCACCAGCAGAGAAATTTTACAAAATCTTTAAAGATCAATGTTTTCATGTTCCTAACATAACCCCAAAATACATTCACCAAGTTGAAATTCATGATTCTGACTGGGATAGCCATGGCCATGGCTCTATCAAGACTTGGTATTACACCGCTGGTGGGAAGGCTGAGATTTTTAAGGAGCAAGTCGAATTTCGCGATGATAAATTGTTAATAATCTTAGTTGGGTTGGAAGGAGATGTATTCAACCATTACAAAAGCTTCAGGCCGTCATATCAAGTTGTGTCCAAGGATCCTAATCATTGCTTGGCAATTCTGACTATAGAGTATGAGAAACTTGACGGTGACACTCCTTATCCTTATAAATATATCGACCTCATGAATGGTATCACTAAGGACATTGAATCTCACCTCAAATAA 456 37.94 MSLVGKLVSELEINAPAEKFYKIFKDQCFHVPNITPKYIHQVEIHDSDWDSHGHGSIKTWYYTAGGKAEIFKEQVEFRDDKLLIILVGLEGDVFNHYKSFRPSYQVVSKDPNHCLAILTIEYEKLDGDTPYPYKYIDLMNGITKDIESHLK 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16094889 16095439 - CcPI632755_07g007630.1 Cco07g0763 183416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0763 151 SUPERFAMILY Bet v1-like 1 150 - -
Cco07g0763 151 SMART Bet_v_1_2 2 151 IPR000916 GO:0006952(InterPro)
Cco07g0763 151 Gene3D - 1 151 IPR023393 -
Cco07g0763 151 Pfam Pathogenesis-related protein Bet v 1 family 2 150 IPR000916 GO:0006952(InterPro)
Cco07g0763 151 CDD Bet_v1-like 5 130 - -
Cco07g0763 151 PANTHER POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORT SUPERFAMILY PROTEIN 1 150 IPR052006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0763 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0763 Cco-Chr7:16094889 Cco11g0151 Cco-Chr11:1586765 6.70E-53 dispersed
Cco07g0755 Cco-Chr7:15509455 Cco07g0763 Cco-Chr7:16094889 8.10E-59 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g446 . . . . . . Bma14g01942 Bma15g00037 . . . . . . . . . Bhi07g00318 Tan04g1589 Cmetu06g2275 Lac13g1456 Hepe01g0498 . . Cla07g00693 Cam07g0724 . Cco07g0763 Clacu07g0724 Cmu07g0730 . . . . . . . Chy10g00249 . Blo06g01017 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01164 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000116 5 5 9 3 1 7 1 9 8 8 6 7 6 9 11 7 7 3 6 7 16 6 10 7 10 14 10 20 8 0 226