Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0770 ATGAACCTTATGGTTTTGAGGTATTCTCCATTTTTCTTCATTTTGTTGGTTTGTGTACTACCTCTGGTTCGAGCTGGAGATGCAGAAGCTCTGTTAGCACTGAAAGAATCTCTTGACCCTGGGAACTCGCTACCATGGCGGGGAAGATCTGTCTGCCACTGGCAAGGGGTTAAAGAATGTGCGAATGGGCGGGTAACTAAGCTCGTTTTGGAGCATCTAAATCTCTCTGGTGTTCTTAACCACAAGATTTTGAATCGTTTAGATCAGCTTCGTGTTCTCAGTTTCAAAGGAAATTCACTTTCCGGTCAAATCCCTGACCTCTCGGGTCTCGTTAATCTCAAATCCCTCTATCTAAGTGACAACAACTTTTCCGGCGAGTTTCCGAGCTCCATCTCCGATCTCCACCGCTTGAAAGTCGTCGTTCTTTCCGGTAACCAAATATCTGGTCCCATTCCAGAGTCATTGCTCAAACTCCGGCGTCTCTATGTTCTACACTTGCAGGACAACCAACTCACCGGCACCATTCCTCCTTTCAACCAAACCAGTCTCCGATTCTTCAATGTCTCTAACAACCACCTCTCCGGCTACATCCCAGTAACCCCCACCTTAGCCCGATTTAATGTCTCGTCATTTTCCGGCAACCTGGAACTTTGCGGAGAACAAGTTCAAAACCCTTGTGGGAATATTTCCATTGCGCCATCATTAAGTCCCTCTTATCCACAAATCCCGAACTCAAGCTCGTCTTCAAGACGCAACAAATTGGTCAAGATAATAGCAGGAAGCGTTGGTGGGTTTGTCGGGCTGCTATTAATCATTCTTTTACTGTGTATGATTTGCAAATGTAGGGAAAGAAAGAGCCTAGCGGAGGTTAGAAACAAAGGAATTGGGGACGAGGGGATGGGGATGGGAATGGAGGAAACATCTGGAACTCCCGGCGGTGGTAGAGGAGGTAATAACGGTGTAAAACAAGGGGGGTTTTCATGGGAAAGTGAAGGACTAGGGAGTCTAGTGTTCTGCGGAGCAGGGGATCAGAAAATGACTTATAGCTTGGAAGATCTGTTGAAAGCTTCGGCTGAGACTTTGGGCAGAGGGACCATCGGAAGCACATACAAGGCAGTGATGGAATCTGGGTATATTGTGACTGTGAAGCGGCTGAAGGATTCAAGGTACCCACGAGCAGAGGAATTCGGACGGCAGATGGAGGTTCTTGGGCGGCTCAGACACCCCAACTTGGTTCCTCTTAGGGCATATTTCCAGGCTAAGGAGGAACGCTTGCTCGTATACGATTACTTCCCCAATGGTAGTCTCTTCTCTCTCATCCACGGATCGAGAACTTCAGGCGGAGGAAAGCCTCTTCATTGGACATCCTGCCTAAAAATAGCTGAAGACTTGGCCAATGGTCTGCTCTACATCCACCAGAACCCAGGCTCCACACATGGAAACCTCAAATCCTCAAACGTACTATTAGGATCCGACTTCGAGTCTTGTCTTACTGATTACGGTCTTAACTTATTCCGAGACCCCGACTCGCTCGAAGAACCTAGTGCAACCTCACTCTTTTACCGAGCTCCTGAATGCCGCGACATCCGTAAGCCAACCACTCAACAAGCTGATGTTTATAGTTTTGGTGTTCTTCTGTTGGAGCTTCTTACTGGGAAAACACCATTCCAAGATCTTGTTCAAGAACATGGTTCTGACATTCCCAAGTGGGTTAGTTCAGTTAGAGAAGAGGAGACGGAGTCCGGGGACGATCCTGCTTCTGGGAACGAGGCATCCGAAGAGAAACTTCAAGCTCTTTTGAACATAGCAATGGCTTGTGTTTCGCTTATGCCGCAAAACCGACCTACAATGAGGGAAGTTCTAAAGATGATAAGAGATACAAGAGCAGAGGCTCAAATCTCATCCAACAGTAGTGATCATTCACCAGGGAGATGGTCTGATATTGTGCAGAGTTTGCCCAGGGAAGAACATTTAAGCATTTGA 1983 47.2 MNLMVLRYSPFFFILLVCVLPLVRAGDAEALLALKESLDPGNSLPWRGRSVCHWQGVKECANGRVTKLVLEHLNLSGVLNHKILNRLDQLRVLSFKGNSLSGQIPDLSGLVNLKSLYLSDNNFSGEFPSSISDLHRLKVVVLSGNQISGPIPESLLKLRRLYVLHLQDNQLTGTIPPFNQTSLRFFNVSNNHLSGYIPVTPTLARFNVSSFSGNLELCGEQVQNPCGNISIAPSLSPSYPQIPNSSSSSRRNKLVKIIAGSVGGFVGLLLIILLLCMICKCRERKSLAEVRNKGIGDEGMGMGMEETSGTPGGGRGGNNGVKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGTIGSTYKAVMESGYIVTVKRLKDSRYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGSTHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSLEEPSATSLFYRAPECRDIRKPTTQQADVYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVSSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLMPQNRPTMREVLKMIRDTRAEAQISSNSSDHSPGRWSDIVQSLPREEHLSI 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16370208 16375151 - CcPI632755_07g007700.1 Cco07g0770 183423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0770 660 MobiDBLite consensus disorder prediction 631 660 - -
Cco07g0770 660 ProSiteProfiles Protein kinase domain profile. 355 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0770 660 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515(InterPro)
Cco07g0770 660 MobiDBLite consensus disorder prediction 631 645 - -
Cco07g0770 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 26 632 IPR046959 -
Cco07g0770 660 Pfam Protein kinase domain 358 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0770 660 MobiDBLite consensus disorder prediction 570 591 - -
Cco07g0770 660 Gene3D Transferase(Phosphotransferase) domain 1 431 646 - -
Cco07g0770 660 Gene3D Ribonuclease Inhibitor 180 228 IPR032675 -
Cco07g0770 660 SUPERFAMILY L domain-like 26 219 - -
Cco07g0770 660 SUPERFAMILY Protein kinase-like (PK-like) 359 633 IPR011009 -
Cco07g0770 660 Gene3D Phosphorylase Kinase; domain 1 338 430 - -
Cco07g0770 660 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Cco07g0770 660 FunFam Nuclear pore complex protein NUP107 24 177 - -
Cco07g0770 660 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0770 Cco-Chr7:16370208 Cco11g0287 Cco-Chr11:2900088 6.20E-79 dispersed
Cco07g0770 Cco-Chr7:16370208 Cco04g1455 Cco-Chr4:29990859 1.10E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86965 PF00069 Pkinase 5.40E-36 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0770 - - - 0.0