Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0773 ATGGATCCCCCAACCTCCTACCGTAGTCGCAGAACCACCAACAAATCTGAGCTCTACTGCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGACAACAATCCTGACGATCAGAATCTTCACCCTCCACGAAGGCCACCCAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGCGGCGACGACGACGACGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGTCTTCCCAAGGATTTCGGTGGCGGAGCCCCAAATGACTACGAGGACGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTCGGTACCATGATCGTCAAGACGGACAGAAATCGTCCTCGAAATCGCTCTATGTCTTCTTCAGTTTCGACGAAGCCTCGAACTTCGCCGCTGCCGTTTATGAACTTTCAGCCGGGGAGCCCCGGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGAGTATTCTACGTTTGTGGTGAGGTCCACGGGGAGGTCGCGAAACGGAGAATCTGTTAGTGGGACTGTTGTTCGAAGGACTGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACATGAGGGGTCCACGATGGGCAGAGCGGTCGCCAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAAGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGCCGGATACGCAGTAAGGTATCCTCAAGTTCGATTCCGGAAAGCGTCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATACAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTATGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTTCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTGATGGAGTACTGTGGGGGTGGCAGTGTTGCCGACTTGATGAATGTTACCGAGGAACCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGTTGTTCCATGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGCAAGCGCATAGTATTGCTCCAGATGCATCCGGAGATGGTACAATAGTAGCTGCAAATTTGAATGAAGATTACGGAGATACTGTTCCTTCAAAGCCTCAAAATATTGGACTTCAGGTAGCAAATGAAATGGCAGCTGGTGGCACATGGAGGAAGCAAGAGCAATCCGGCACTGAATTTGTAGCAGAAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCATTGCTGAACCACCAACTGGTTCCTTGCGCAATCAGAGCCTAACCGTTAGTGTAACTAGAGTCGACTCTAGTGTGCTGGATCGTACAGGCGGTATTGTAAATAATATTCTTGATGGAAAATCAGATCCCACCATGCATGCATCTTCACCTTCATTCTTGGGTATTCATGAGCATAACACATTGAAGAATGAAACTGTCAGCCGAAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCCATTCCATTCTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCGTGCAGCATGATAATAGGGGTACCGTAGCAGTGGAAACACTTCAGGAACTTTTCACTGGTGATGGACAATCAAAGAAGGGTCGTAGGGGTCAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACCATTCAAAATCTTTGTGATACTCTTAGAACTATCCTTCGATTTCATCTGGTCCTTGCAGCGAAAGGACCTACTGCCTTTTCTAATAAGGGGTTTACCCAGAGTCGGCAGAGGGAAAAGTGTTCAAGTCTGAGCATATTGATTGAAAATTGCAATGGAAATTACTTCAATCAGTAG 2658 46.61 MDPPTSYRSRRTTNKSELYCTVVIHSNSDSDSDNNPDDQNLHPPRRPPSEGQDLYATMLYKDVDKPRGDDDDDDDSSLPPLLKRLPKDFGGGAPNDYEDDHAFDFDHDTEDFGTMIVKTDRNRPRNRSMSSSVSTKPRTSPLPFMNFQPGSPGKRAGSEEGDDSEEDDGDEYSTFVVRSTGRSRNGESVSGTVVRRTAGSRSGSRDGGGGHEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESVTREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEPLEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNEDYGDTVPSKPQNIGLQVANEMAAGGTWRKQEQSGTEFVAEGTFGTVIVHDGDENDKVASQLDIGIAEPPTGSLRNQSLTVSVTRVDSSVLDRTGGIVNNILDGKSDPTMHASSPSFLGIHEHNTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRFHLVLAAKGPTAFSNKGFTQSRQREKCSSLSILIENCNGNYFNQ 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16443287 16464197 + CcPI632755_07g007730.1 Cco07g0773 183426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0773 885 CDD STKc_MAP4K3_like 271 526 - -
Cco07g0773 885 FunFam serine/threonine-protein kinase dst1 isoform X1 269 559 - -
Cco07g0773 885 Gene3D Transferase(Phosphotransferase) domain 1 268 561 - -
Cco07g0773 885 SUPERFAMILY Protein kinase-like (PK-like) 269 527 IPR011009 -
Cco07g0773 885 MobiDBLite consensus disorder prediction 25 217 - -
Cco07g0773 885 ProSitePatterns Protein kinases ATP-binding region signature. 278 301 IPR017441 GO:0005524(InterPro)
Cco07g0773 885 Pfam Protein kinase domain 272 526 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0773 885 FunFam Aurora kinase A 264 353 - -
Cco07g0773 885 MobiDBLite consensus disorder prediction 176 199 - -
Cco07g0773 885 MobiDBLite consensus disorder prediction 93 125 - -
Cco07g0773 885 MobiDBLite consensus disorder prediction 126 146 - -
Cco07g0773 885 MobiDBLite consensus disorder prediction 229 269 - -
Cco07g0773 885 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 244 564 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Cco07g0773 885 ProSiteProfiles Protein kinase domain profile. 272 526 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0773 885 SMART serkin_6 272 526 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0773 Cco-Chr7:16443287 Cco09g2111 Cco-Chr9:35503847 9.30E-54 dispersed
Cco11g1192 Cco-Chr11:23407614 Cco07g0773 Cco-Chr7:16443287 0.00E+00 transposed
Cco11g1840 Cco-Chr11:31059705 Cco07g0773 Cco-Chr7:16443287 2.50E-63 transposed
Cco04g0385 Cco-Chr4:12511391 Cco07g0773 Cco-Chr7:16443287 1.90E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86966 PF00069 Pkinase 1.30E-67 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0773 - - - 0.0