Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0773 ATGGATCCCCCAACCTCCTACCGTAGTCGCAGAACCACCAACAAATCTGAGCTCTACTGCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGACAACAATCCTGACGATCAGAATCTTCACCCTCCACGAAGGCCACCCAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGCGGCGACGACGACGACGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGTCTTCCCAAGGATTTCGGTGGCGGAGCCCCAAATGACTACGAGGACGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTCGGTACCATGATCGTCAAGACGGACAGAAATCGTCCTCGAAATCGCTCTATGTCTTCTTCAGTTTCGACGAAGCCTCGAACTTCGCCGCTGCCGTTTATGAACTTTCAGCCGGGGAGCCCCGGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGAGTATTCTACGTTTGTGGTGAGGTCCACGGGGAGGTCGCGAAACGGAGAATCTGTTAGTGGGACTGTTGTTCGAAGGACTGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACATGAGGGGTCCACGATGGGCAGAGCGGTCGCCAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAAGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGCCGGATACGCAGTAAGGTATCCTCAAGTTCGATTCCGGAAAGCGTCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATACAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTATGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTTCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTGATGGAGTACTGTGGGGGTGGCAGTGTTGCCGACTTGATGAATGTTACCGAGGAACCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGTTGTTCCATGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGCAAGCGCATAGTATTGCTCCAGATGCATCCGGAGATGGTACAATAGTAGCTGCAAATTTGAATGAAGATTACGGAGATACTGTTCCTTCAAAGCCTCAAAATATTGGACTTCAGGTAGCAAATGAAATGGCAGCTGGTGGCACATGGAGGAAGCAAGAGCAATCCGGCACTGAATTTGTAGCAGAAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCATTGCTGAACCACCAACTGGTTCCTTGCGCAATCAGAGCCTAACCGTTAGTGTAACTAGAGTCGACTCTAGTGTGCTGGATCGTACAGGCGGTATTGTAAATAATATTCTTGATGGAAAATCAGATCCCACCATGCATGCATCTTCACCTTCATTCTTGGGTATTCATGAGCATAACACATTGAAGAATGAAACTGTCAGCCGAAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCCATTCCATTCTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCGTGCAGCATGATAATAGGGGTACCGTAGCAGTGGAAACACTTCAGGAACTTTTCACTGGTGATGGACAATCAAAGAAGGGTCGTAGGGGTCAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACCATTCAAAATCTTTGTGATACTCTTAGAACTATCCTTCGATTTCATCTGGTCCTTGCAGCGAAAGGACCTACTGCCTTTTCTAATAAGGGGTTTACCCAGAGTCGGCAGAGGGAAAAGTGTTCAAGTCTGAGCATATTGATTGAAAATTGCAATGGAAATTACTTCAATCAGTAG 2658 46.61 MDPPTSYRSRRTTNKSELYCTVVIHSNSDSDSDNNPDDQNLHPPRRPPSEGQDLYATMLYKDVDKPRGDDDDDDDSSLPPLLKRLPKDFGGGAPNDYEDDHAFDFDHDTEDFGTMIVKTDRNRPRNRSMSSSVSTKPRTSPLPFMNFQPGSPGKRAGSEEGDDSEEDDGDEYSTFVVRSTGRSRNGESVSGTVVRRTAGSRSGSRDGGGGHEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESVTREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEPLEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNEDYGDTVPSKPQNIGLQVANEMAAGGTWRKQEQSGTEFVAEGTFGTVIVHDGDENDKVASQLDIGIAEPPTGSLRNQSLTVSVTRVDSSVLDRTGGIVNNILDGKSDPTMHASSPSFLGIHEHNTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRFHLVLAAKGPTAFSNKGFTQSRQREKCSSLSILIENCNGNYFNQ 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16443287 16464197 + CcPI632755_07g007730.1 Cco07g0773 183426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0773 885 CDD STKc_MAP4K3_like 271 526 - -
Cco07g0773 885 FunFam serine/threonine-protein kinase dst1 isoform X1 269 559 - -
Cco07g0773 885 Gene3D Transferase(Phosphotransferase) domain 1 268 561 - -
Cco07g0773 885 SUPERFAMILY Protein kinase-like (PK-like) 269 527 IPR011009 -
Cco07g0773 885 MobiDBLite consensus disorder prediction 25 217 - -
Cco07g0773 885 ProSitePatterns Protein kinases ATP-binding region signature. 278 301 IPR017441 GO:0005524(InterPro)
Cco07g0773 885 Pfam Protein kinase domain 272 526 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0773 885 FunFam Aurora kinase A 264 353 - -
Cco07g0773 885 MobiDBLite consensus disorder prediction 176 199 - -
Cco07g0773 885 MobiDBLite consensus disorder prediction 93 125 - -
Cco07g0773 885 MobiDBLite consensus disorder prediction 126 146 - -
Cco07g0773 885 MobiDBLite consensus disorder prediction 229 269 - -
Cco07g0773 885 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 244 564 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Cco07g0773 885 ProSiteProfiles Protein kinase domain profile. 272 526 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0773 885 SMART serkin_6 272 526 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0773 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0773 Cco-Chr7:16443287 Cco09g2111 Cco-Chr9:35503847 9.30E-54 dispersed
Cco11g1192 Cco-Chr11:23407614 Cco07g0773 Cco-Chr7:16443287 0.00E+00 transposed
Cco11g1840 Cco-Chr11:31059705 Cco07g0773 Cco-Chr7:16443287 2.50E-63 transposed
Cco04g0385 Cco-Chr4:12511391 Cco07g0773 Cco-Chr7:16443287 1.90E-08 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco11g1840 . 85 756 MAP Kinase Kinase Kinase Kinase AT1G53165 61.1 6.9e-214 740.7
Cco07g0773 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.4 3.9e-68 256.5
Cco11g1192 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.3e-67 253.4
Cco11g1840 . 85 755 MAP Kinase Kinase Kinase Kinase AT3G15220 63.1 7.1e-219 757.3
Cco07g0773 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.9 1.8e-68 257.7
Cco11g1192 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.5e-67 254.6
Cco11g1192 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 5.4e-242 834.3
Cco07g0773 . 4 841 MAP Kinase Kinase Kinase Kinase AT1G69220 57.9 2.3e-240 828.9
Cco09g2111 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 7.4e-253 870.2
Cco05g0526 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.2e-96 351.3
Cco10g0091 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 64.9 1.0e-247 853.2
Cco10g0091 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.7 1.4e-246 849.4
Cco10g1271 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 52.1 1.2e-132 470.7
Cco10g0091 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.7e-118 422.2
Cco10g1271 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.7 5.4e-216 747.7
Cco09g2111 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.7e-103 372.9
Cco10g1271 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.0e-87 320.1
Cco10g0091 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Cco05g0526 . 32 488 MAP Kinase Kinase Kinase Kinase AT4G14480 59.4 7.7e-143 504.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86966 PF00069 Pkinase 1.30E-67 CL0016 Cco PK