Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0778 ATGCTTTCTCGAGATCCCCATATTGTTAGGTTGATGGATGTCGAACGAGGCCAGAACAAGGCCAGAACAAGGCTAGAAAAAACGTCCTTTACTTTGGTGTTTGAATATATGGATACTGATCTTAAGAAATTCATCAAGAGTTTTTGTCATACGGGAGAAAATATTCCCGTTAACACTGTCAAGAGTTTGATGTACCAACTCTGCAAGGGCGTTGCCTTCTGTCATGGTCATGGAATCCTGCACAGGGACCTGAAACCACACAATCTCTTGATAGACCGAAAGACTATGATGCTCAAAATTGAAGACCTTGGGTTGGCTCAAGCATTTACTGTGCCAATTAAGATGTATACTCATGAGATACTGACCCTCTGGTATTCAACTCATTACTCCACAGCTGGAGATATGCAGTCTGTTGCTTGCATATTCGTTGCCGGAAGTGGCTACATCTTCATCCATGGATACAAAGTTGTTTAA 474 41.98 MLSRDPHIVRLMDVERGQNKARTRLEKTSFTLVFEYMDTDLKKFIKSFCHTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLIDRKTMMLKIEDLGLAQAFTVPIKMYTHEILTLWYSTHYSTAGDMQSVACIFVAGSGYIFIHGYKVV 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16635618 16636091 - CcPI632755_07g007780.1 Cco07g0778 183431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0778 157 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0778 157 Pfam Protein kinase domain 5 143 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0778 157 PANTHER CELL DIVISION PROTEIN KINASE 5 143 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Cco07g0778 157 SMART serkin_6 1 155 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0778 157 Gene3D Phosphorylase Kinase; domain 1 2 36 - -
Cco07g0778 157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 79 91 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0778 157 Gene3D Transferase(Phosphotransferase) domain 1 37 144 - -
Cco07g0778 157 SUPERFAMILY Protein kinase-like (PK-like) 4 143 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0778 Cco-Chr7:16635618 Cco11g1957 Cco-Chr11:32088666 4.30E-63 dispersed
Cco07g0778 Cco-Chr7:16635618 Cco08g1822 Cco-Chr8:29256625 1.40E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86967 PF00069 Pkinase 1.20E-26 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0778 K07760 - csv:101208001 240.35