Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0793 ATGGCCAATTCGTTCAACAATTTGCTTCTCTGTTTGGGGTTTGTGGTAATTTTTGGTCAAGCCATGGCTACTAGGTTCATTGATCTCATTGATAATCAAAAGATTGACACGGCATGGTATGATGCTCGTGCCACCTTCTACGGCGACATAAGGGGTGATGAAACTATGCAGGGAGCTTGCGGGTATGGAAATTTATTCAAGCAAGGTTATGGGCTAGCAACAGCGGCACTTAGTACAGCACTTTTCAACAACGGTGGAGCTTGTGGAGCATGCTTTGAGATAATGTGTGTAAACAATGAACAAAATTGGTGCATACCAAATGCAGGCACAATCAAAATAACGGCCACAAACTTCTGTCCTCCAAACTACACAAAAACACATGACATTTGGTGCAACCCACCCCAGCGCCATTTTGACCTATCTCTTTACATGTTCACCAAAATGGCACCTTACAGGGCTGGAGTCATTTCGGTTCGCTATCGTCGGACGCTTTGCCACAAACAGGGTGGCATGCGTTTCGAGCTCAAAGGGAACCCTTATTGGCTTCTTGTATTGTTATACAATGTTGGTGGTGTTGGTGATGTTGTTGATGTTAAGATTAAAGGTTCTTCTACTGGTTGGCTTCAAATGTCAAGGAATTGGGGTCAAAATTGGCAGGTTGGTACCTTTTTAGTGGGACAAAGTTTGTCCTTTAGAGTCACTACTAGTGATGGGAAGACTATTGAATTTGATAATGTTGTGCCAAGCTCTTGGGAGTTAGGGCAGAACTTTGAAGGAAAGTATAATTTTTAG 792 42.93 MANSFNNLLLCLGFVVIFGQAMATRFIDLIDNQKIDTAWYDARATFYGDIRGDETMQGACGYGNLFKQGYGLATAALSTALFNNGGACGACFEIMCVNNEQNWCIPNAGTIKITATNFCPPNYTKTHDIWCNPPQRHFDLSLYMFTKMAPYRAGVISVRYRRTLCHKQGGMRFELKGNPYWLLVLLYNVGGVGDVVDVKIKGSSTGWLQMSRNWGQNWQVGTFLVGQSLSFRVTTSDGKTIEFDNVVPSSWELGQNFEGKYNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17716892 17717771 + CcPI632755_07g007930.1 Cco07g0793 183446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0793 263 SUPERFAMILY PHL pollen allergen 167 258 IPR036749 -
Cco07g0793 263 SUPERFAMILY Barwin-like endoglucanases 38 188 IPR036908 -
Cco07g0793 263 PRINTS Expansin signature 128 145 IPR002963 GO:0009664(InterPro)
Cco07g0793 263 PRINTS Expansin signature 97 108 IPR002963 GO:0009664(InterPro)
Cco07g0793 263 PRINTS Expansin signature 145 158 IPR002963 GO:0009664(InterPro)
Cco07g0793 263 PRINTS Expansin signature 111 121 IPR002963 GO:0009664(InterPro)
Cco07g0793 263 PRINTS Expansin signature 245 261 IPR002963 GO:0009664(InterPro)
Cco07g0793 263 PRINTS Expansin signature 181 202 IPR002963 GO:0009664(InterPro)
Cco07g0793 263 PRINTS Expansin signature 216 237 IPR002963 GO:0009664(InterPro)
Cco07g0793 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664(InterPro)
Cco07g0793 263 PRINTS Expansin signature 169 181 IPR002963 GO:0009664(InterPro)
Cco07g0793 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
Cco07g0793 263 SMART dpbb_1 74 160 IPR007112 -
Cco07g0793 263 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Cco07g0793 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 170 IPR007112 -
Cco07g0793 263 Gene3D - 170 263 IPR036749 -
Cco07g0793 263 PANTHER EXPANSIN-A15 12 260 IPR002963 GO:0009664(InterPro)
Cco07g0793 263 CDD DPBB_EXPA_N 39 165 - -
Cco07g0793 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Cco07g0793 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Cco07g0793 263 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576(InterPro)
Cco07g0793 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
Cco07g0793 263 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576(InterPro)
Cco07g0793 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576(InterPro)
Cco07g0793 263 Gene3D - 28 166 IPR036908 -
Cco07g0793 263 Pfam Lytic transglycolase 74 160 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0793 Cco-Chr7:17716892 Cco09g2168 Cco-Chr9:36068482 2.10E-78 dispersed
Cco07g0793 Cco-Chr7:17716892 Cco07g0796 Cco-Chr7:17767058 8.60E-56 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0793 - - - 0.0