Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0811 AAATTTTCTTTTGGAGATACAAAATATATTGATATCTCATTTTCCAATCAAGAACTTCTGTCCACCAAAATTCAGTTTTTTTGCTGGTCAGAAATGGCAGTGAATGAGACCGGAACGGGTAGCTGTCCGGCGGCGATGAAAGCGACGTCGAACGGCGTGTTTCAAGGCGACAACCCGCTTGATTTCGCTCTCCCTTTAGCCATTCTTCAAATATGTTTAGTGGTTGTTCTTACTCGTCTTCTTGGTTTCCTTCTCCGACCACTCAGACAACCTCGAGTCATCGCTGAGATTGTCGGAGGAATATTGTTGGGACCGTCGGCAGTGGGGCGGAGCCAAGAATTTCTTCACAGAGTCTTTCCGGCAAGAAGCCAACCGGTGTTGGACACATTGGCAAATCTGGGTCTTCTGTTCTTCCTATTTTTGGTGGGGTTGGAGTTAGATCTCAAATCCCTCCGTCGTACCGGAAAGGGTGCAATGGCCATAGCCATTGCCGGAATCACCCTCCCTTTCATCCTCGGCATTGGAACCTCCTATGTCCTCCGTTCCACCATCTCCAAAGGCGTCCATGGCCCTCCTTTTCTCGTTTTCATGGGCGTAGCTCTCTCCATTACCGCTTTCCCCGTCCTTGCCCGCATTCTCGCTGAACTCAAGCTCTTAACCACCAACGTCGGTCGCATGGCCATGTCTGCCGCCGCCGTCAATGACATCGCCGCTTGGATTCTCCTGGCCCTCGCCGTCGCCCTCTCCGGCACCGGCCGCTCCCCTCTCGTCTCCCTCTGGGTCTTCCTGTGCGGCTTTGCTTTTGTCCTGTTTTGCTTCTTCACTCTCCCGCCCATCTTCGGTTGGATTTCCCGCCACTGCTCCAATGGCGAGCCAGTAAGCGAACTCTACATTTGCGCCATTTTATCCAGCGTCTTGGCAGCTGGATTCATCACCGACTTAATTGGAATCCACGCCCTGTTTGGCGCTTTCGTCGTCGGTGTCTTCGTCCCAAAAGACGGCCCACTCGCTGGAGCCCTGGTGGAGAAAGTCGAAGATCTTGTATCGGGTCTATTCCTCCCTCTCTATTTCGTATCAAGTGGATTAAAAACCAACATTGCCACAATCAAAGGAGCCCAATCATGGGGTCTCCTCGTCCTGGTGGTATTCACCGCTTGTTTTGGGAAAATCATCGGCACAATCTCTGTAGCACTCTTTTGCAAGATGCCACTCCAAGAATCAATCGCTTTAGGATTCTTAATGAACACCAAAGGGCTAGTGGAATTAATCGTCCTAAACATAGGGAAAGACAGAAAAGTTTTAAATGACCAAACCTTTGCGATTTTAGTTCTAATGGCTATAATCACGACGTTCATCACAACCCCAGTCGTAATGGCGGTTTACAAGCCAGCAAAAAGAAAGAGCAAATCAGAACACACATGCAGAACAATCGAGCGAGAGGAGGGCAATTCAGAGCTGCGGATTTTGGCTTGCTTTCACTCTGTTAATAACATTCCTTCGATATTGAATCTGATAGAGGTTTCTCGTGGGAGGGAGGGTCGTGGTCGGCGGTTATGTGTTTATGCGATGCATTTGATGGAGCTGACGGAGAGGTCGTCGGCAATTGTAATGGTTCATAGAGCTCGAAAGAATGGATTGCCGTTTTGGAATAAAAGAGGAGGGCAGTCAGATTCGGATCAAATAGTGGTGGCTTTTGAGGCTTTTGAGCAGCTTAGTCGAGTGTCAATACGTCCAATGACGGCCATATCTGCGTTCTCAGATATGCATGAAGATATTTGTAACAGTGCCGACAGAAAACGTGCCGCCATTATCATCCTCCCATTCCACAAACACCAAAGGTTTGATGGATCTTTGGAGACAACACGAACTGATTTTCGATGGGTGAATCAAAAAGTTCTAGAACAACCACCATGCTCGGTTGGGATCTTAGTCGATCGAGGTTTCGGAGGTGGTTCACACATATGTGCTAGTAACGTTTCTTCCATCATAACTGTCTTCTTCTTTGGCGGTCGTGACGATCGCGAAGCTTTAGCCTATGGTCGAAGAATGGCTGAACATCCAGGAATAACCCTAAATGTCGTTCGTATTCTTCCAAGCTCTGACATGGCTATAGAATCAACTATAGTTGACATGAATAAAGACGATAGCAATATTTCGGCACTCATGGATCAGAAAGTATTGATGGAGTTGAATGTGAAAAAAACAGAGGACGAGTCAATTAGATATGAAGAGAGAACAGTGAGCAAATGCAATGAGACTATTGAAATAATAAGAGAATTTAGTAGATGCAATTTGATATTGGTGGGTCAATCCCCTGAAGGCCAAGTAGTGGAAAGTCTTCATTTCAAAGGAGTTGAATGCTCGGAGTTGGGTCCCATTGGCAACTTGTTGATATCATCTGAGCTCCCAATGTCAGCTTCAGTGTTGGTGGTGCAACAGTTTCGTGGTCCATTATTGTCTTCTTCATCCACGTCTACAGCCATGGTATTGCCTGAAGAAGTTACTGAGTAA 2511 47.11 KFSFGDTKYIDISFSNQELLSTKIQFFCWSEMAVNETGTGSCPAAMKATSNGVFQGDNPLDFALPLAILQICLVVVLTRLLGFLLRPLRQPRVIAEIVGGILLGPSAVGRSQEFLHRVFPARSQPVLDTLANLGLLFFLFLVGLELDLKSLRRTGKGAMAIAIAGITLPFILGIGTSYVLRSTISKGVHGPPFLVFMGVALSITAFPVLARILAELKLLTTNVGRMAMSAAAVNDIAAWILLALAVALSGTGRSPLVSLWVFLCGFAFVLFCFFTLPPIFGWISRHCSNGEPVSELYICAILSSVLAAGFITDLIGIHALFGAFVVGVFVPKDGPLAGALVEKVEDLVSGLFLPLYFVSSGLKTNIATIKGAQSWGLLVLVVFTACFGKIIGTISVALFCKMPLQESIALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMAIITTFITTPVVMAVYKPAKRKSKSEHTCRTIEREEGNSELRILACFHSVNNIPSILNLIEVSRGREGRGRRLCVYAMHLMELTERSSAIVMVHRARKNGLPFWNKRGGQSDSDQIVVAFEAFEQLSRVSIRPMTAISAFSDMHEDICNSADRKRAAIIILPFHKHQRFDGSLETTRTDFRWVNQKVLEQPPCSVGILVDRGFGGGSHICASNVSSIITVFFFGGRDDREALAYGRRMAEHPGITLNVVRILPSSDMAIESTIVDMNKDDSNISALMDQKVLMELNVKKTEDESIRYEERTVSKCNETIEIIREFSRCNLILVGQSPEGQVVESLHFKGVECSELGPIGNLLISSELPMSASVLVVQQFRGPLLSSSSTSTAMVLPEEVTE 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18399460 18404527 + CcPI632755_07g008110.1 Cco07g0811 183464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0811 836 Coils Coil 718 738 - -
Cco07g0811 836 Gene3D - 66 472 IPR038770 -
Cco07g0811 836 PANTHER CATION/H + ANTIPORTER 42 815 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Cco07g0811 836 FunFam Cation/H(+) antiporter 15 66 468 - -
Cco07g0811 836 Pfam Sodium/hydrogen exchanger family 77 456 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0051 Cco-Chr2:552627 Cco07g0811 Cco-Chr7:18399460 2.10E-201 dispersed
Cco04g0401 Cco-Chr4:13048245 Cco07g0811 Cco-Chr7:18399460 7.40E-136 dispersed
Cco07g0811 Cco-Chr7:18399460 Cco07g0814 Cco-Chr7:18470619 0.00E+00 dispersed
Cco07g0810 Cco-Chr7:18068150 Cco07g0811 Cco-Chr7:18399460 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0811 K26731 - csv:101203169 1350.88