Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0817 ATGTCAAATGGCTTCTTCTCTTTCCGATCTTCCGCCGCCAACGAATTGCACCCAAGTTTTCATCATTCTGATTCAGAAACCTTCCTGGTTCTAGGAAGCCTATTTTTGAACAGAAAGCCATTAAAACAGCCACGAGTGATTGGAGAAATTATTGGAGGAATACTTCTAGGACCATCAGCTCTTGGACGTAACAAGAACTTTCTTCATATGATATTTCCATCCAATAGTATGACATTGTTAGATACCATAGCAAACATTGGGTTGTTATTCTTTCTCTTTCTTGTGGGTCTTGAGTTAGATCTAAAGTCAATACGTCGTACTGGAAAGAAGGCCCTTGGCATTGCCATTACTGGAATTTGCGTTCCCTTTGCATTAGGAATTGGATCATCATTTGTCCTCCGAGGAACCATATCCAAAGGTGTAAATGCTTCTGCATTTCTCATATTCATGGGTGTTGCACTTTCGATAACAGCCTTTCCCGTCTTAGCTCGCATTCTTGCTGAGCTTAAACTACTGACGACTGATGTTGGCAGGATGGCTATGTCTGCTGCAGCAGTAAATGACGTAGCTGCCTGGATTCTCCTTGCTCTTGCCATTGCATTATCAGGTTCTGATAAATCTCCCCTAACTGCAGTTTGGGTCCTTTTATCTGGCTGTGGCTTTGTTGTGGCCGCTGTCGTCATTTTATCCCCAGTTTTCAAATGGATGACCAAGCAATGTTTTCAAGGGGAGCCTGTACGGGAAATCTACATATGCGCCACATTAGCTATTGTCCTAGCTGCTGGATTTGCCACGGATTTTATTGGGATACATGCTATGTTTGGAGCTTTTGTTGTTGGAGTATTAGTTCCAAAGGATGGACCATTAGTGGGTGCTTTGGTAGAGAAAATAGAGGATCTTGTTTCTGGTCTATTCCTGCCTCTGTACTTTGTCTCAAGTGGATTGAAGACTAATGTAGCCACAATTCAAGGAGCACAGTCCTGGGGTCTTCTAGTTTTAGTTATTGTCACCGCCTGTTCTGGAAAAATCCTTGGCACTTTTCTAGTGTCCCTTCTTTGTAAAGTACCTGTTCGTGAGGCTCTCGCGTTAGGATTTCTAATGAACACAAAAGGTTTGGTGGAGCTTATTGTTCTCAATATTGGAAAAGATAGAAAGGTTTTAAATGATCAGACCTTTGCAATAATGATTCTAATGGCTCTTTTTACTACTTTCATTACCACTCCCCTTGTCATTGCTGTATACAAGCCAGCAAGGAGTGCCAAATTAGCCGATTATAAACATAGGAAAATTGAACGGAAAAACAAGAATACTCAGCTTCGGATGTTGACCTGTTTCCATAGTGCAGGAAACATTCCATCAATTATAAATTTGCTTGAGGCCTCGAGAGGAATTCAGAAGGGAGAAGAACTTTGTGTATATGCAATGCATCTCATGGAGCTGTCCGAGCGGTCCTCAGCCATTTTAATGGTACACAAGGCCAGGAAAAATGGGTTGCCTTTCTGGAATAAGGGCCAGAGGTCAGATTCCAACCATGTTATCATTGCGTTTGAAGCTTATCAACAACTGAGCAGAGTATTCATCCGAGCGATGACGGCCATTTCCTCCATGTCTGATATACATGAAGATATCTGTGCTACTGCTGAGCGGAAAAGAACTGCAATCATAATTCTTCCATTCCACAAGCACCAGAGGGTGGATGGTTCGCTGGAGACTACTCAAAGCAGCATCCGTGTTGTTAATCAGAATGTCCTCGAGCATGCTCAATGTTCAGTTGGAATTTTCGTTGATCGGGGGTTGGGTGGAACAACCCATGTTTCTTCGAGCAATGTTTCACTTTTCATCACTGTTCTATTCTTTGGTGGTGGAGATGATCGCGAAGCACTTTCTTATGGAGTTCGTATGGCCGAGCACCCTGGCATTAGGTTGATGGTTATTCGTTTCTTTGTTGAACCCGAGCCTGTTGGGGAGATAGTCAGTGCTGATACTGTTGGGAATTCTTCTGCGAAGATGGTTTCTCAGGATGATGAATTTCTTTCTGAGTTCAGGAACAATGTGAGCAATAACGATTCCGTCATATATGTAGAGAAAACCATAAAAAGTGCTGCAGAAGCAATGGATACAGTACAGGAGCTGAAAAACTGCAATCTGTATCTTGTTGGTCGAACACCGGATGTCAATTCAACCTTTGCCTTAAACAGAAGTGACTGTCCGGAGCTTGGTCCAGTTGGGAACCTGTTGACTTCACCGAACTTCACGATTTCAGCGTCGGTTTTGGTGGTGCAGCAATATCGTTCCGAGTTACTGGTGAATTCGGCTTCAGATTCTGCTGATGGAGAATCAGAATCATCATAA 2352 42.94 MSNGFFSFRSSAANELHPSFHHSDSETFLVLGSLFLNRKPLKQPRVIGEIIGGILLGPSALGRNKNFLHMIFPSNSMTLLDTIANIGLLFFLFLVGLELDLKSIRRTGKKALGIAITGICVPFALGIGSSFVLRGTISKGVNASAFLIFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSDKSPLTAVWVLLSGCGFVVAAVVILSPVFKWMTKQCFQGEPVREIYICATLAIVLAAGFATDFIGIHAMFGAFVVGVLVPKDGPLVGALVEKIEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVIVTACSGKILGTFLVSLLCKVPVREALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMILMALFTTFITTPLVIAVYKPARSAKLADYKHRKIERKNKNTQLRMLTCFHSAGNIPSIINLLEASRGIQKGEELCVYAMHLMELSERSSAILMVHKARKNGLPFWNKGQRSDSNHVIIAFEAYQQLSRVFIRAMTAISSMSDIHEDICATAERKRTAIIILPFHKHQRVDGSLETTQSSIRVVNQNVLEHAQCSVGIFVDRGLGGTTHVSSSNVSLFITVLFFGGGDDREALSYGVRMAEHPGIRLMVIRFFVEPEPVGEIVSADTVGNSSAKMVSQDDEFLSEFRNNVSNNDSVIYVEKTIKSAAEAMDTVQELKNCNLYLVGRTPDVNSTFALNRSDCPELGPVGNLLTSPNFTISASVLVVQQYRSELLVNSASDSADGESESS 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18633466 18637270 + CcPI632755_07g008170.1 Cco07g0817 183470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0817 783 PANTHER CATION/H + ANTIPORTER 29 771 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Cco07g0817 783 FunFam Cation/H(+) antiporter 15 27 421 - -
Cco07g0817 783 Pfam Sodium/hydrogen exchanger family 30 409 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cco07g0817 783 Gene3D - 27 422 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0501 Cco-Chr7:6150026 Cco07g0817 Cco-Chr7:18633466 4.70E-105 dispersed
Cco07g0817 Cco-Chr7:18633466 Cco09g1297 Cco-Chr9:14264336 1.10E-85 dispersed
Cco07g0814 Cco-Chr7:18470619 Cco07g0817 Cco-Chr7:18633466 1.50E-273 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0817 K26731 - csv:101223205 1308.51