Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0837 ATGGGAACTTCTTCATTGATTAATAATTGTGAAATTGATTGGGATGGGCTTTTTTCTGGATCATCTTGTTTGAGTAATATAGAGATGGAGAAGGGAATTTGTGGAAGTGAGGATCAGGTTATTGCAGCAATGGGAGATTATGATAATGTTGTGAATATTGGAGGAATAAAAGAGGGTGATATTGGTGGAGGGAAGAATAATTGTAATAAAGGGAAAATGGTGATGGGTAAAAGAAGAAGTGCAATGGCTCCAAGGATTGCTTTTCAGACAAGGAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCAGTCAAACATAGCAATCATCCTAGGAGCTATTACCGGTGTACACATCACACATGCAACGTTAAGAAACAAATTCAAAGGCACGCCAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCACAACCATCCATCTGAGAAATTAATGGAGACTCTAAGCCCTCTTCTTAAGCAATTGCAGTTCCTTTCTGGCATTTAG 531 39.55 MGTSSLINNCEIDWDGLFSGSSCLSNIEMEKGICGSEDQVIAAMGDYDNVVNIGGIKEGDIGGGKNNCNKGKMVMGKRRSAMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHAKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLSGI 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19298010 19300236 - CcPI632755_07g008370.1 Cco07g0837 183490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0837 176 SUPERFAMILY WRKY DNA-binding domain 90 156 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0837 176 Gene3D WRKY domain 81 156 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0837 176 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 69 155 IPR044810 GO:0003700(InterPro)
Cco07g0837 176 SMART WRKY_cls 97 156 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0837 176 ProSiteProfiles WRKY domain profile. 92 157 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g0837 176 FunFam WRKY transcription factor 57 83 157 - -
Cco07g0837 176 Pfam WRKY DNA -binding domain 98 155 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0159 Cco-Chr5:1236545 Cco07g0837 Cco-Chr7:19298010 4.60E-37 dispersed
Cco07g0837 Cco-Chr7:19298010 Cco07g1625 Cco-Chr7:30315596 1.90E-30 dispersed
Cco07g0837 Cco-Chr7:19298010 Cco07g0839 Cco-Chr7:19409511 1.70E-12 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59625 PF03106 WRKY 7.30E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0837 - - - 0.0