Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0837 | ATGGGAACTTCTTCATTGATTAATAATTGTGAAATTGATTGGGATGGGCTTTTTTCTGGATCATCTTGTTTGAGTAATATAGAGATGGAGAAGGGAATTTGTGGAAGTGAGGATCAGGTTATTGCAGCAATGGGAGATTATGATAATGTTGTGAATATTGGAGGAATAAAAGAGGGTGATATTGGTGGAGGGAAGAATAATTGTAATAAAGGGAAAATGGTGATGGGTAAAAGAAGAAGTGCAATGGCTCCAAGGATTGCTTTTCAGACAAGGAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAGGCAGTCAAACATAGCAATCATCCTAGGAGCTATTACCGGTGTACACATCACACATGCAACGTTAAGAAACAAATTCAAAGGCACGCCAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCACAACCATCCATCTGAGAAATTAATGGAGACTCTAAGCCCTCTTCTTAAGCAATTGCAGTTCCTTTCTGGCATTTAG | 531 | 39.55 | MGTSSLINNCEIDWDGLFSGSSCLSNIEMEKGICGSEDQVIAAMGDYDNVVNIGGIKEGDIGGGKNNCNKGKMVMGKRRSAMAPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHAKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLSGI | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 19298010 | 19300236 | - | CcPI632755_07g008370.1 | Cco07g0837 | 183490 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0837 | 176 | SUPERFAMILY | WRKY DNA-binding domain | 90 | 156 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0837 | 176 | Gene3D | WRKY domain | 81 | 156 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0837 | 176 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 69 | 155 | IPR044810 | GO:0003700(InterPro) | |
Cco07g0837 | 176 | SMART | WRKY_cls | 97 | 156 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0837 | 176 | ProSiteProfiles | WRKY domain profile. | 92 | 157 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco07g0837 | 176 | FunFam | WRKY transcription factor 57 | 83 | 157 | - | - | |
Cco07g0837 | 176 | Pfam | WRKY DNA -binding domain | 98 | 155 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0159 | Cco-Chr5:1236545 | Cco07g0837 | Cco-Chr7:19298010 | 4.60E-37 | dispersed | |
Cco07g0837 | Cco-Chr7:19298010 | Cco07g1625 | Cco-Chr7:30315596 | 1.90E-30 | dispersed | |
Cco07g0837 | Cco-Chr7:19298010 | Cco07g0839 | Cco-Chr7:19409511 | 1.70E-12 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59625 | PF03106 | WRKY | 7.30E-25 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0837 | - | - | - | 0.0 |