Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0858 ATGATTCAAAGATGGGAATTGTTGCTCATCTTTGCCTTTTTTGGGATCAAATGCTGGAATGTGACGAATATGGCTTATCCTGATCCACTTTTTGATCATTCTATTGTTGGGTGCTGTTGGACTTTAGATCATAACAAGCCTGTCCCTGACCTCCAGGATGTTGAAAATGAAGGGAGTAGTGACCTTGACATACCTGCATTTCGTGAATACACCATTGAGCAACTAAGGACAGCTACATCTGGATTTGCTGTTGAGAATATTGTTTCAGAACACGGGGAAAAGGCTCCGAATGTTGTTTATAAGGGGAAGCTCGAGAATCAAAAACGCATTGTTGTCAAACGGTTCAACAGATCAGCTTGGCCAGATGCTAGGCAATTTCTGGAAGAAGCCAAGAATGTGGGTCAGCTACGAAATCTAAGGTTGGCAAATTTGCTTGGTTGTTGCTGTGAAGGTGATGAGAGATTGTTAATTGCAGAATATATGCCTAATGAAACATTGGCAAAGCACTTGTTTCATTGGGACTCTCAACCTCTGAAATGGACCATGCGCTTAAGAGTGGCCTTATATATTGCACAAGCTTTGGAGTACTGTACAAGTAAAGGCCGTGCCCTATATCATGATCTCAATGCCTATAGAGTTGTTTTTGATGATGATGGAAACCCCAGGCTTTCATGCTTTGGTATGATGAAAAACAGCAGAGATGGTAAAAGCTACAGCACAAATTTGGCATTTTGTCCTCCGGAGTATCTCAAAACAGGAAGAGTTACTCCAGAAAGTGTTATGTACAGCTTTGGCACTCTATTGCTTGATCTCCTCAGCGGAAAACATATCCCACCTAGCCATGCTCTTGACTTGATAAGGGACAGGAATCTTCAAATGCTGACAGATTCTTGTTTGGAAGGACAATTTTCAAACGATGAAGGGACGGAATTAGTGAGATTAGCTTCTCGTTGTTTGCAGTATGAGCCTCGAGAGCGTCCTAATCCAAAATCATTAGTTTCTTCTCTAACTCCTCTTCAAACGGACACTGAGGTTCCTTCACATGTATTATTGGGCATACCGCGTGATGCTTCAGATTTACCTCTTACACCACTTGGAGAAGCTTGTTTAAGAATGGATTTGACTGTCATTCACGAGATTTTGGAAAAGATAAATTACAAGGATGATGAAGGTTCAGCAACCGAGCTTTCCTTCCAGATGTGGACCAACCAGATGCAGGAAACATTGAGTTCAAAGAAAAGTGGAGATCTTGCTTTTCGGCACAAAGATTTTAGAGCTGCAATTGATTCATATACACAGTTCATTGATGCCGGAGCTGTGCTTTCCCCAACAATGTTTGCACGTCGTAGTTTGTCATATCTCGCATGTGAGATGCCGCAAGAAGCTTTAAACGATGCAATGCAAGCTCAAGTTATATCACCTGCCTGGCATATTGCATCTTATTTGCAAGCTGCTGCACTTTTTGCACTTGGTAGCAACAATGAGGCACAAGCAGCTCTCAGAGATGGATTTGCACTTGAAACCAAAACAACTGCCAAATAA 1542 41.89 MIQRWELLLIFAFFGIKCWNVTNMAYPDPLFDHSIVGCCWTLDHNKPVPDLQDVENEGSSDLDIPAFREYTIEQLRTATSGFAVENIVSEHGEKAPNVVYKGKLENQKRIVVKRFNRSAWPDARQFLEEAKNVGQLRNLRLANLLGCCCEGDERLLIAEYMPNETLAKHLFHWDSQPLKWTMRLRVALYIAQALEYCTSKGRALYHDLNAYRVVFDDDGNPRLSCFGMMKNSRDGKSYSTNLAFCPPEYLKTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSNDEGTELVRLASRCLQYEPRERPNPKSLVSSLTPLQTDTEVPSHVLLGIPRDASDLPLTPLGEACLRMDLTVIHEILEKINYKDDEGSATELSFQMWTNQMQETLSSKKSGDLAFRHKDFRAAIDSYTQFIDAGAVLSPTMFARRSLSYLACEMPQEALNDAMQAQVISPAWHIASYLQAAALFALGSNNEAQAALRDGFALETKTTAK 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19914592 19920028 + CcPI632755_07g008580.1 Cco07g0858 183511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0858 513 FunFam probable serine/threonine-protein kinase At4g35230 406 513 - -
Cco07g0858 513 FunFam probable serine/threonine-protein kinase At5g41260 162 353 - -
Cco07g0858 513 Gene3D Phosphorylase Kinase; domain 1 57 160 - -
Cco07g0858 513 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 36 511 IPR045845 GO:0004672(InterPro)|GO:0009742(InterPro)|GO:0009742(PANTHER)
Cco07g0858 513 SUPERFAMILY Protein kinase-like (PK-like) 61 346 IPR011009 -
Cco07g0858 513 FunFam probable serine/threonine-protein kinase At4g35230 57 160 - -
Cco07g0858 513 Pfam Protein tyrosine and serine/threonine kinase 98 336 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0858 513 SUPERFAMILY TPR-like 410 510 IPR011990 GO:0005515(InterPro)
Cco07g0858 513 Gene3D Transferase(Phosphotransferase) domain 1 162 353 - -
Cco07g0858 513 Gene3D Tetratricopeptide repeat domain 395 507 IPR011990 GO:0005515(InterPro)
Cco07g0858 513 ProSiteProfiles Protein kinase domain profile. 85 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0858 K14500 - - csv:101211110 950.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0283 Cco-Chr1:2700133 Cco07g0858 Cco-Chr7:19914592 7.00E-229 dispersed
Cco04g0928 Cco-Chr4:24957242 Cco07g0858 Cco-Chr7:19914592 7.40E-202 dispersed
Cco05g1732 Cco-Chr5:25684984 Cco07g0858 Cco-Chr7:19914592 2.70E-159 dispersed
Cco07g0858 Cco-Chr7:19914592 Cco08g1114 Cco-Chr8:22855219 5.60E-168 dispersed
Cco07g0858 Cco-Chr7:19914592 Cco02g2120 Cco-Chr2:34035231 7.70E-202 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g326 . . . Bda08g00519 . . . . . . Cma02g01456 . Car02g01222 . . . Cpe05g00330 . . . . . . . Cla07g00767 Cam07g0823 Cec07g0881 Cco07g0858 Clacu07g0802 Cmu07g0807 Cre07g1162 Cone8ag0308 Cone12ag0309 Cone6ag0775 Cone9ag0780 . Csa05g00285 Chy09g01223 Cme07g01626 . . . . . . . . . Cmo02g01491 . . . . . . . Bhi12g00254 . . . . . . Cla01g00268 Cam01g0275 Cec01g0268 Cco01g0283 Clacu01g0275 Cmu01g0263 Cre09g2245 Lsi09g00263 Csa04g00598 Chy07g01213 Cme09g01759
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000293 4 9 3 3 3 3 5 4 4 3 4 3 5 4 4 5 3 11 5 4 4 4 4 4 4 4 4 17 7 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86970 PF07714 PK_Tyr_Ser-Thr 5.60E-26 CL0016 Cco PK