Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0864 ATGAGAAGACGTACGGATGCTGATGATTTGAGGCCTGTTAACAATACTTTCCAAACCATTACTGCCGCCGCTGATGCGATCGCCACTGTTGATCATCGTTTTCCTCGGGCTACTGCCGTCCAGAAAAGAAGATGGGGCAGTTGTTGGAGTATTTATTGGTGCTTTGGATCCCTCAAACAGAGGAAAAGAATTGGGCACGCTGTTTTGGTACCAGAATCAAGTCCTTCATCTGAGCCTCATGAAAATACATTGCAATCACCAGATATTGTGCTTCCTTTTGCTGCACCTCCCTCTTCCCCTGCATCCTTCCTTCAATCTGACCCACCTTCTGCTACACAGTCACCAACACCTTTAATTTCTTTCTCTTCCCTCACTTCTAACATGTATTCTCCTGATGGGCCTTCCTCCATTTTTGCCATTGGCCCATTTGCTCATGAAACACAACTAGTTTCTCCACCGCTCAATTTCTCTACTCTCACGACTGAACCATCAACTGCTCCCTTCACTCCTCCTGAGTCTATTCACTTGACTACCCCTTCTTCCCCTGAAGTTCCTTTTGCTCAGTTTCTTCAACCTACCCTCCACAAACCTGAGTCTGATCATCAATATCCATTTCCTAATGATGACTTCCAATCTTACCAATTCTATCCAGGCAGTCCAGTTAGTCACCTCATATCACCACGGTCCGTTATTTCTCGTTCTGGGGCTTCGTCGCCTTTGCCTGACTATGATTTTGCTTCCTTTGGTTCTCAATTTTTGAATTTCCCATTAGAAGTTCCACCTACTTTGTTGAATCTTGACAAGCATTCCATTCATAACTGGCCACAACGACAAAGTACTGATTGTTGCACTCAAGATTCTATAGAATTCAAATCAAGTAATGATTTTGTTTTGAATCCCCAAACTTCAGAATCTATGTCAGATCACCACGCAACAAATGAATCTCAAAATATTCAAATTCTCATTGATGGAAGCCAAACGGAGGAGGAGCCAGCTGCTACTAATCATAGATTCTCATTTGAATTATCTGATCGAGATGTTCTATTACAAAGCGTAGGAAGTAAACCACTGGAATCAAATGAACTTACTGTTGCATCGTCTCCAATACATGAACCATCTGAAACGGCTAAAGAAAATTCTCCTATTGGTGACCATACTTCAAATGTTACAGGAGAAAAGACAAAAGCAGACGGTGAAGAAGCACATCAGCATCAAGAACATCATTCCATTACTCTTGGGTCTGTGAAGGAATTCAATTTTGATAATGGCAATGGAAGTGATACACATAAGCCAAATATAAATTCAGAATGGTGGACTAATGCAAAGGATGTTGACACAGAAGGCACAACCACGAGCGCCTGGTCATTCTTTCCAATGGCGCAGCAAAGATGA 1392 42.31 MRRRTDADDLRPVNNTFQTITAAADAIATVDHRFPRATAVQKRRWGSCWSIYWCFGSLKQRKRIGHAVLVPESSPSSEPHENTLQSPDIVLPFAAPPSSPASFLQSDPPSATQSPTPLISFSSLTSNMYSPDGPSSIFAIGPFAHETQLVSPPLNFSTLTTEPSTAPFTPPESIHLTTPSSPEVPFAQFLQPTLHKPESDHQYPFPNDDFQSYQFYPGSPVSHLISPRSVISRSGASSPLPDYDFASFGSQFLNFPLEVPPTLLNLDKHSIHNWPQRQSTDCCTQDSIEFKSSNDFVLNPQTSESMSDHHATNESQNIQILIDGSQTEEEPAATNHRFSFELSDRDVLLQSVGSKPLESNELTVASSPIHEPSETAKENSPIGDHTSNVTGEKTKADGEEAHQHQEHHSITLGSVKEFNFDNGNGSDTHKPNINSEWWTNAKDVDTEGTTTSAWSFFPMAQQR 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20017618 20019737 - CcPI632755_07g008640.1 Cco07g0864 183517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0864 463 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 11 462 IPR040420 -
Cco07g0864 463 MobiDBLite consensus disorder prediction 359 389 - -
Cco07g0864 463 MobiDBLite consensus disorder prediction 99 117 - -
Cco07g0864 463 MobiDBLite consensus disorder prediction 390 409 - -
Cco07g0864 463 MobiDBLite consensus disorder prediction 359 409 - -
Cco07g0864 463 MobiDBLite consensus disorder prediction 98 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0864 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0983 Cco-Chr5:8654724 Cco07g0864 Cco-Chr7:20017618 6.50E-81 dispersed
Cco07g0864 Cco-Chr7:20017618 Cco11g1976 Cco-Chr11:32213105 6.40E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g303 . . . . . . . . . Cmo16g00645 . . . . . . . . . . . . . . Cla07g00774 Cam07g0832 Cec07g0887 Cco07g0864 Clacu07g0809 Cmu07g0815 Cre07g1169 Cone8ag0293 Cone12ag0299 . . . . . Cme07g01631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01217 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010049 0 2 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33