Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0865 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGTAGCAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTTGTAACAACAACAACAACAATAACAAAAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATACTTCCCACTTGATTCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGACCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATCGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATGATAATCATAATCGTCATCCGGTTCTTGACGGCTCGTCCTATGGTGGGGCATCGGCTTTTTACCATTTGACATCCCCCGCCACAGCGCCGCAGATAGAGGCAGTGCCGGTTGTAGCAGATGGAAAGGGTGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTCAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACAACAATGTTGTCGTCGTCTCAATTCCATGTTTATAATGGGATGCCGATGCCGATGCTGATGCCGATGTCGATGCAGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA 1149 43.34 MDDFGSSSRFHHHQYYNFESSSSSNNNNNNRRSRDFDDDEQQQQQDQEMEECCNNNNNNNKNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHDNHNRHPVLDGSSYGGASAFYHLTSPATAPQIEAVPVVADGKGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMLMPMSMQMPINNNNVSTMEFFEKGKSSMSSSFDFDT 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20059607 20060755 - CcPI632755_07g008650.1 Cco07g0865 183518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0865 382 MobiDBLite consensus disorder prediction 15 30 - -
Cco07g0865 382 Gene3D - 69 184 IPR015300 -
Cco07g0865 382 SUPERFAMILY DNA-binding pseudobarrel domain 73 178 IPR015300 -
Cco07g0865 382 FunFam B3 domain-containing protein 69 188 - -
Cco07g0865 382 Pfam B3 DNA binding domain 76 179 IPR003340 GO:0003677(InterPro)
Cco07g0865 382 MobiDBLite consensus disorder prediction 15 56 - -
Cco07g0865 382 ProSiteProfiles B3 DNA-binding domain profile. 76 180 IPR003340 GO:0003677(InterPro)
Cco07g0865 382 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 21 307 IPR044800 GO:0003700(InterPro)
Cco07g0865 382 CDD B3_DNA 74 163 IPR003340 GO:0003677(InterPro)
Cco07g0865 382 SMART B3_2 76 180 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0234 Cco-Chr6:2499661 Cco07g0865 Cco-Chr7:20059607 2.20E-51 dispersed
Cco07g0865 Cco-Chr7:20059607 Cco08g0894 Cco-Chr8:20796660 2.30E-09 dispersed
Cco03g1420 Cco-Chr3:28395296 Cco07g0865 Cco-Chr7:20059607 1.20E-23 transposed
Cco10g1857 Cco-Chr10:32196066 Cco07g0865 Cco-Chr7:20059607 8.20E-39 transposed
Cco01g0128 Cco-Chr1:1127062 Cco07g0865 Cco-Chr7:20059607 1.90E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59628 PF02362 B3 1.40E-27 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0865 K09287 - csv:101220139 507.679