Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0865 | ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGTAGCAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTTGTAACAACAACAACAACAATAACAAAAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATACTTCCCACTTGATTCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGACCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATCGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATGATAATCATAATCGTCATCCGGTTCTTGACGGCTCGTCCTATGGTGGGGCATCGGCTTTTTACCATTTGACATCCCCCGCCACAGCGCCGCAGATAGAGGCAGTGCCGGTTGTAGCAGATGGAAAGGGTGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTCAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACAACAATGTTGTCGTCGTCTCAATTCCATGTTTATAATGGGATGCCGATGCCGATGCTGATGCCGATGTCGATGCAGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA | 1149 | 43.34 | MDDFGSSSRFHHHQYYNFESSSSSNNNNNNRRSRDFDDDEQQQQQDQEMEECCNNNNNNNKNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHDNHNRHPVLDGSSYGGASAFYHLTSPATAPQIEAVPVVADGKGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMLMPMSMQMPINNNNVSTMEFFEKGKSSMSSSFDFDT | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 20059607 | 20060755 | - | CcPI632755_07g008650.1 | Cco07g0865 | 183518 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0865 | 382 | MobiDBLite | consensus disorder prediction | 15 | 30 | - | - | |
Cco07g0865 | 382 | Gene3D | - | 69 | 184 | IPR015300 | - | |
Cco07g0865 | 382 | SUPERFAMILY | DNA-binding pseudobarrel domain | 73 | 178 | IPR015300 | - | |
Cco07g0865 | 382 | FunFam | B3 domain-containing protein | 69 | 188 | - | - | |
Cco07g0865 | 382 | Pfam | B3 DNA binding domain | 76 | 179 | IPR003340 | GO:0003677(InterPro) | |
Cco07g0865 | 382 | MobiDBLite | consensus disorder prediction | 15 | 56 | - | - | |
Cco07g0865 | 382 | ProSiteProfiles | B3 DNA-binding domain profile. | 76 | 180 | IPR003340 | GO:0003677(InterPro) | |
Cco07g0865 | 382 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 21 | 307 | IPR044800 | GO:0003700(InterPro) | |
Cco07g0865 | 382 | CDD | B3_DNA | 74 | 163 | IPR003340 | GO:0003677(InterPro) | |
Cco07g0865 | 382 | SMART | B3_2 | 76 | 180 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0234 | Cco-Chr6:2499661 | Cco07g0865 | Cco-Chr7:20059607 | 2.20E-51 | dispersed | |
Cco07g0865 | Cco-Chr7:20059607 | Cco08g0894 | Cco-Chr8:20796660 | 2.30E-09 | dispersed | |
Cco03g1420 | Cco-Chr3:28395296 | Cco07g0865 | Cco-Chr7:20059607 | 1.20E-23 | transposed | |
Cco10g1857 | Cco-Chr10:32196066 | Cco07g0865 | Cco-Chr7:20059607 | 8.20E-39 | transposed | |
Cco01g0128 | Cco-Chr1:1127062 | Cco07g0865 | Cco-Chr7:20059607 | 1.90E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59628 | PF02362 | B3 | 1.40E-27 | CL0405 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0865 | K09287 | - | csv:101220139 | 507.679 |