Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0865 ATGGATGACTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGTAGCAGCAGCAGCAACAACAACAATAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAACAAGATCAAGAAATGGAAGAATGTTGTAACAACAACAACAACAATAACAAAAACAATAATAATTGTTGTGTTTTTGTAGAGAAAGAGCACATGTTTGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCTGAAAAATACTTCCCACTTGATTCTTCATCCAACGAAAAAGGTCTTCTCTTAAACTTTGAAGACCGCTGTGGTAAGCTTTGGCGCTTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTGATGACCAAAGGCTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTACATCATGCTAAAGATCGTTTTTTTATCGATTGGCGACGCCGTCCACCGCATCCCACCGTCGACATGCCTTTTCCTTTCAACCGCGGTGGCCAATTTCCTCCTCATCACCATTTTCAGCTTCACGGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCACAATAATAATGTCAGTTTATTTCATAATACCTATAATCATCATCATGATAATCATAATCGTCATCCGGTTCTTGACGGCTCGTCCTATGGTGGGGCATCGGCTTTTTACCATTTGACATCCCCCGCCACAGCGCCGCAGATAGAGGCAGTGCCGGTTGTAGCAGATGGAAAGGGTGGTGGTGGGAAAACGGCTGCGGCTAAGACGACATTGAGGCTTTTTGGTGTCAACATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAGTGTGACATAGGAACAACTTCGACGACAACAATGTTGTCGTCGTCTCAATTCCATGTTTATAATGGGATGCCGATGCCGATGCTGATGCCGATGTCGATGCAGATGCCAATAAATAATAACAACGTATCAACCATGGAGTTCTTCGAGAAAGGGAAGTCATCGATGTCGTCGTCCTTTGATTTTGATACTTGA 1149 43.34 MDDFGSSSRFHHHQYYNFESSSSSNNNNNNRRSRDFDDDEQQQQQDQEMEECCNNNNNNNKNNNNCCVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHHAKDRFFIDWRRRPPHPTVDMPFPFNRGGQFPPHHHFQLHGQWNNNPVATPLSLHRDHVLHLPHNNNVSLFHNTYNHHHDNHNRHPVLDGSSYGGASAFYHLTSPATAPQIEAVPVVADGKGGGGKTAAAKTTLRLFGVNMECAVSEESGDDECDIGTTSTTTMLSSSQFHVYNGMPMPMLMPMSMQMPINNNNVSTMEFFEKGKSSMSSSFDFDT 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20059607 20060755 - CcPI632755_07g008650.1 Cco07g0865 183518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0865 382 MobiDBLite consensus disorder prediction 15 30 - -
Cco07g0865 382 Gene3D - 69 184 IPR015300 -
Cco07g0865 382 SUPERFAMILY DNA-binding pseudobarrel domain 73 178 IPR015300 -
Cco07g0865 382 FunFam B3 domain-containing protein 69 188 - -
Cco07g0865 382 Pfam B3 DNA binding domain 76 179 IPR003340 GO:0003677(InterPro)
Cco07g0865 382 MobiDBLite consensus disorder prediction 15 56 - -
Cco07g0865 382 ProSiteProfiles B3 DNA-binding domain profile. 76 180 IPR003340 GO:0003677(InterPro)
Cco07g0865 382 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 21 307 IPR044800 GO:0003700(InterPro)
Cco07g0865 382 CDD B3_DNA 74 163 IPR003340 GO:0003677(InterPro)
Cco07g0865 382 SMART B3_2 76 180 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0865 K09287 - - csv:101220139 507.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0234 Cco-Chr6:2499661 Cco07g0865 Cco-Chr7:20059607 2.20E-51 dispersed
Cco07g0865 Cco-Chr7:20059607 Cco08g0894 Cco-Chr8:20796660 2.30E-09 dispersed
Cco03g1420 Cco-Chr3:28395296 Cco07g0865 Cco-Chr7:20059607 1.20E-23 transposed
Cco10g1857 Cco-Chr10:32196066 Cco07g0865 Cco-Chr7:20059607 8.20E-39 transposed
Cco01g0128 Cco-Chr1:1127062 Cco07g0865 Cco-Chr7:20059607 1.90E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g277 . . . . . . Bma07g01046 Bma14g00089 Cmo06g00500 Cmo16g00647 . . . Car15g01205 . Cpe14g00507 . . . . . . . . Cla07g00776 Cam07g0833 Cec07g0888 Cco07g0865 Clacu07g0810 Cmu07g0816 Cre07g1170 . . . . . . . Cme07g01632 Blo03g00788 Blo19g00130 Bda07g00161 . Bpe08g00913 Bpe11g00381 . . . . . Cma06g00497 Cma16g00597 . . Cpe08g00992 . . . . . . . . . . . . . . . . Csa04g00592 Chy07g01218 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1857 . 41 156 RAV Transcription Factor Family AT2G36080 75.9 9.7e-48 186.8
Cco06g0234 . 78 193 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Cco01g0128 . 51 160 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cco07g0865 . 68 179 RAV Transcription Factor Family AT2G36080 69.2 1.7e-39 159.5
Cco05g2568 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.1e-38 154.8
Cco01g0128 . 51 166 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Cco07g0865 . 71 312 RAV Transcription Factor Family AT2G46870 50.8 5.0e-55 211.8
Cco06g0234 . 73 323 RAV Transcription Factor Family AT2G46870 50.8 1.6e-53 206.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.0e-39 159.5
Cco10g1857 . 36 152 RAV Transcription Factor Family AT2G46870 66.7 3.3e-38 156.0
Cco10g1857 . 34 163 RAV Transcription Factor Family AT3G11580 65.2 6.6e-44 174.5
Cco06g0234 . 80 200 RAV Transcription Factor Family AT3G11580 59.1 7.6e-40 161.0
Cco01g0128 . 51 162 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Cco07g0865 . 71 179 RAV Transcription Factor Family AT3G11580 63.9 1.9e-38 156.4
Cco01g0128 . 50 166 RAV Transcription Factor Family AT3G61970 80.8 2.3e-52 203.0
Cco07g0865 . 70 309 RAV Transcription Factor Family AT3G61970 50.8 1.9e-51 199.9
Cco06g0234 . 81 315 RAV Transcription Factor Family AT3G61970 51.3 4.7e-50 195.3
Cco05g2568 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cco01g0128 . 52 163 RAV Transcription Factor Family AT4G01500 69.7 6.9e-42 168.3
Cco07g0865 . 72 179 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Cco10g1857 . 41 240 RAV Transcription Factor Family AT5G06250 53.0 2.7e-49 192.6
Cco06g0234 . 83 193 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.0e-37 151.4
Cco06g1417 . 73 367 RAV Transcription Factor Family AT1G50680 52.5 8.7e-85 310.8
Cco03g1420 . 47 328 RAV Transcription Factor Family AT1G50680 54.2 4.2e-79 292.0
Cco06g1417 . 69 367 RAV Transcription Factor Family AT1G51120 52.7 4.5e-84 308.5
Cco03g1420 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Cco05g2568 . 1 347 RAV Transcription Factor Family AT1G13260 62.7 3.1e-106 382.1
Cco03g1000 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cco01g0128 . 53 160 RAV Transcription Factor Family AT1G13260 71.6 8.1e-38 154.8
Cco10g1857 . 41 153 RAV Transcription Factor Family AT1G13260 68.1 1.8e-37 153.7
Cco06g0234 . 79 193 RAV Transcription Factor Family AT1G13260 66.4 2.4e-37 153.3
Cco05g2568 . 6 314 RAV Transcription Factor Family AT3G25730 64.3 4.2e-100 361.7
Cco03g1000 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.8e-89 323.9
Cco10g1857 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.1e-36 151.0
Cco05g2568 . 1 348 RAV Transcription Factor Family AT1G68840 61.6 9.6e-111 397.1
Cco03g1000 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cco10g1857 . 41 169 RAV Transcription Factor Family AT1G68840 63.8 7.5e-39 158.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cco06g0234 . 83 200 RAV Transcription Factor Family AT1G68840 63.3 1.8e-37 153.7
Cco05g2568 . 6 314 RAV Transcription Factor Family AT3G25730 64.3 4.2e-100 361.7
Cco03g1000 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 9.8e-89 323.9
Cco10g1857 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.1e-36 151.0
Cco06g1417 . 69 367 RAV Transcription Factor Family AT1G51120 52.7 4.5e-84 308.5
Cco03g1420 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 1.8e-77 286.6
Cco10g1857 . 34 163 RAV Transcription Factor Family AT3G11580 65.2 6.6e-44 174.5
Cco06g0234 . 80 200 RAV Transcription Factor Family AT3G11580 59.1 7.6e-40 161.0
Cco01g0128 . 51 162 RAV Transcription Factor Family AT3G11580 61.8 6.4e-39 157.9
Cco07g0865 . 71 179 RAV Transcription Factor Family AT3G11580 63.9 1.9e-38 156.4
Cco01g0128 . 52 163 RAV Transcription Factor Family AT4G01500 69.7 6.9e-42 168.3
Cco07g0865 . 72 179 RAV Transcription Factor Family AT4G01500 66.4 6.0e-38 155.2
Cco10g1857 . 41 156 RAV Transcription Factor Family AT2G36080 75.9 9.7e-48 186.8
Cco06g0234 . 78 193 RAV Transcription Factor Family AT2G36080 68.9 5.5e-43 171.0
Cco01g0128 . 51 160 RAV Transcription Factor Family AT2G36080 69.0 1.3e-39 159.8
Cco07g0865 . 68 179 RAV Transcription Factor Family AT2G36080 69.2 1.7e-39 159.5
Cco05g2568 . 183 322 RAV Transcription Factor Family AT2G36080 56.0 4.1e-38 154.8
Cco10g1857 . 41 240 RAV Transcription Factor Family AT5G06250 53.0 2.7e-49 192.6
Cco06g0234 . 83 193 RAV Transcription Factor Family AT5G06250 64.5 1.8e-40 163.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT5G06250 64.7 2.0e-39 159.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT5G06250 62.4 7.0e-37 151.4
Cco01g0128 . 51 166 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Cco07g0865 . 71 312 RAV Transcription Factor Family AT2G46870 50.8 5.0e-55 211.8
Cco06g0234 . 73 323 RAV Transcription Factor Family AT2G46870 50.8 1.6e-53 206.8
Cco05g2568 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.0e-39 159.5
Cco10g1857 . 36 152 RAV Transcription Factor Family AT2G46870 66.7 3.3e-38 156.0
Cco06g1417 . 73 367 RAV Transcription Factor Family AT1G50680 52.5 8.7e-85 310.8
Cco03g1420 . 47 328 RAV Transcription Factor Family AT1G50680 54.2 4.2e-79 292.0
Cco01g0128 . 50 166 RAV Transcription Factor Family AT3G61970 80.8 2.3e-52 203.0
Cco07g0865 . 70 309 RAV Transcription Factor Family AT3G61970 50.8 1.9e-51 199.9
Cco06g0234 . 81 315 RAV Transcription Factor Family AT3G61970 51.3 4.7e-50 195.3
Cco05g2568 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.7e-39 160.2
Cco05g2568 . 1 347 RAV Transcription Factor Family AT1G13260 62.7 3.1e-106 382.1
Cco03g1000 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.2e-92 337.0
Cco01g0128 . 53 160 RAV Transcription Factor Family AT1G13260 71.6 8.1e-38 154.8
Cco10g1857 . 41 153 RAV Transcription Factor Family AT1G13260 68.1 1.8e-37 153.7
Cco06g0234 . 79 193 RAV Transcription Factor Family AT1G13260 66.4 2.4e-37 153.3
Cco05g2568 . 1 348 RAV Transcription Factor Family AT1G68840 61.6 9.6e-111 397.1
Cco03g1000 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.0e-93 338.6
Cco10g1857 . 41 169 RAV Transcription Factor Family AT1G68840 63.8 7.5e-39 158.3
Cco01g0128 . 52 160 RAV Transcription Factor Family AT1G68840 70.3 1.7e-38 157.1
Cco06g0234 . 83 200 RAV Transcription Factor Family AT1G68840 63.3 1.8e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59628 PF02362 B3 1.40E-27 CL0405 Cco TF