Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0873 ATGGGCTTGAGAAATTCAACCCAATATGACAAATTCTTTGATTTAATTAATTTCCCAGGTGTAGGAAAGGAGGTTTTCTCCTGTTGCTACGATGTTACCCCACTGATAAAAGCTGAAGATCAGATCCAGCCACAAGGCAATATCATGAGTAGAGGTGGAAGCTATGGTGGTGGAAGAAGCTCCTTAGGCTATCTTTTTGGTAAGGATGATCAACCCAGAAAGCCTCAAGTTTCCAAAGTTGTTCTTCCTCCTCCTTATGGAATTGATCTCAACCCTGATGATAATAACAACAATCCTTCTCCCTTTCCAAAACAACTTCTTTCCAACAATTATCCTCGAGCTCATGGCCAAAACTCCGGCAACTTCATAACGGATCGTCCATCAACCAAGGTGAAATCTGCTCCGGGTGGCGATTCGTCGCTAGGGTATCTGTTTGGAGATAAGTGA 447 42.95 MGLRNSTQYDKFFDLINFPGVGKEVFSCCYDVTPLIKAEDQIQPQGNIMSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDNNNNPSPFPKQLLSNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDK 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20246863 20251198 + CcPI632755_07g008730.1 Cco07g0873 183526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0873 148 PANTHER SPR1 49 148 IPR039613 GO:0010005(PANTHER)|GO:0043622(PANTHER)|GO:0043622(InterPro)
Cco07g0873 148 MobiDBLite consensus disorder prediction 91 128 - -
Cco07g0873 148 MobiDBLite consensus disorder prediction 61 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0873 K18635 - - csv:101209879 171.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0873 Cco-Chr7:20246863 Cco08g1199 Cco-Chr8:23716076 4.90E-16 dispersed
Cco07g0873 Cco-Chr7:20246863 Cco11g0496 Cco-Chr11:5208371 4.60E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g30 . . . . . . . . . . . . . . . . . . . . . . . . Cla07g00782 Cam07g0839 Cec07g0895 Cco07g0873 Clacu07g0816 Cmu07g0822 Cre07g1176 . . Cone6ag0801 . . . . Cme07g01636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00589 Chy07g01222 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013243 1 1 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 26