Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0880 ATGGCAAGCCACGCCCACAGCCACCCCGATGCTCCTATGCAGCCAGCCACGCCCATAGCCCACAAATGTTGCCCGCCGTTAGCAGCATGCCCTGCCGGTGTCGCCCACGCCTCTGTCCATGCCCACGCCCATGCCCATGCCCACGCCTGCTGCCCCAGTGCCCACACCCCTGCCAGCACCGCACGCCCACCAGCTGCTCACCTTGGGTGCCTACCGCTACTCTGGTGCAATCTGCGTCTTCATAACGGGTTGCAGACAAAATGGAGTCCCAGTGGGGTTGAGTTCATGGGGAGATGGCCTATTTCATCCAATGCTTCCATTTTAGATTGCAACAAAGATGTTGATCCTAGTCCGAGTAATGGCTGTTACATTGCCCCGGCTTGTTCGGTAGAGGGAAGTTATGCGAATGTTGACTATGATGATTGCAAAGCCACAATTAGATGTTATTTTGAGAAAATTCTTTGGGTTTTTCTGAAGGAAATTGGTCGTAGAGGACTTATTAGGCCAGTGCCGGCGTTACTAGGTGAAGGGGGATCTTTGGATTTGTTTGAACTCTTCATGGTAGTAAGAGATAAAGGAGGTTATCAAGTGGTTTCAGAAAAGGAACTATGGTCTTCAGTGGTTTTGGAATTAGGTTTGGATCTTGGGCTTTCGGCTTCAGTGAAGTTGATTTATTTGAAGTATTTAAATGACCTAGAGAAATGGCTTATGGTGAGATGGGGAGGCACAAAACTGGAAAATGGGAACTCTGATTATCACTACAGGAAAAGCTTTCCATTTTTGTCAGAACTGGAGGTGAAGATTAAGGGTATGTTATTTGGTGTGCTGAGACAAAAGAGCATATATGATGAATGTTCTAGATTCAAATCTAACAAACCAAATGAGAATGTTAATGTTGCTGCCGCTACAGTGGAGAAGGAAATAAAGAAGAAAGAAGACGATCTTCATGGGGATGTTACACCAATTCAACAAAATTGTATTGATACACCTCGGGATAATGGTGAAACCGATCAAATCCATGTTATTGAAGATTGTAGAATTTTGGATGCTGTTAATGTTGAAACTGACATAGACTCTCATGGGAGATATCGAAAATCGTTATTACAAATGCTGAAGTGGGTGAGAAAGACTGCAAAGCATCCTGTAAATCCATTAAATGGTACAATACCAGGGGCATCCAAGTGGAAAGCGTATGCTAGCGATGATGCATTATGGCTTCAAGTTATCAGGGCAAAGAATGCTCTTTTAACTAGGAAGGATGTTGACAAAAATGCTGAGAAACGTCTGTTAATACAGAAGAAAGTAAGGATGCATCCATCCATTTATGAGGATAATATTGATAAACATCACCTTTCTACAGAAAGGATCTGTTGCAGCAAAAGATCTAATGCTTTGGTCGAATCCGTCTTCGTCACGCATAATAATTCATGTCCAATCGTTCAAAGTAATTGTATTAGTAGTCTAACAACAGAAATTGGGAAGGGACTCAAGAAGAATCGAGCACTCTTGAATGGTGATTTACCATCTGAAACGGAAGACAATCAGCCAAATGAAGATTCTGTTGATAAGCCAGTTCCCGTGGGTGCTTTATTTCAAGCAGTGGTGCCTGAATGGACTGGTAATATTTCCGATAGCGACTCTAAATGGCTAGGGACAAAGTCGTGGCCTTCTCCACACAGAAATAGTAATTCCGTAAGTGATAGAAATCCCATTGGTAGAGGGAGACTGGATTCATGTAGATGTCAATTTCCAGGTTCTGTTGAATGTTTTAGATTTCACATTGCGGAAGCGAGGATGAGATTAAAGCTTGAACTTGGTTTGACATTCTACGATTGGAGATTTCATCATATGGGGGAGGAAACATCTCTGCAGTGGACTGCCGAAGAGGAAAAGAGATTTAAGGAGTTGGCAACATCAAGTTTTAACAATCAGAGTCAGTGCTTTTGGAATCATTCCTTGAAGTGGTTCCCATTGAAATCAAAGAAAAATTTGATAAGCTATTACTTCAATGTGTTTCTTTTACGGCAGAGAAGCTATCAGAATCGTGTAACTCCAAATAGCATTGATAGCGATGATGAAGATGTAGAATTTGGTTGCATCAGTGGTGACTTTGGGGCTAAGGCAATGGAAATTTTAGGCTCAAAGTCTGTAGAATGTTCTGAAAATAGACAATTCACAGATGTGGAGTAG 2190 42.47 MASHAHSHPDAPMQPATPIAHKCCPPLAACPAGVAHASVHAHAHAHAHACCPSAHTPASTARPPAAHLGCLPLLWCNLRLHNGLQTKWSPSGVEFMGRWPISSNASILDCNKDVDPSPSNGCYIAPACSVEGSYANVDYDDCKATIRCYFEKILWVFLKEIGRRGLIRPVPALLGEGGSLDLFELFMVVRDKGGYQVVSEKELWSSVVLELGLDLGLSASVKLIYLKYLNDLEKWLMVRWGGTKLENGNSDYHYRKSFPFLSELEVKIKGMLFGVLRQKSIYDECSRFKSNKPNENVNVAAATVEKEIKKKEDDLHGDVTPIQQNCIDTPRDNGETDQIHVIEDCRILDAVNVETDIDSHGRYRKSLLQMLKWVRKTAKHPVNPLNGTIPGASKWKAYASDDALWLQVIRAKNALLTRKDVDKNAEKRLLIQKKVRMHPSIYEDNIDKHHLSTERICCSKRSNALVESVFVTHNNSCPIVQSNCISSLTTEIGKGLKKNRALLNGDLPSETEDNQPNEDSVDKPVPVGALFQAVVPEWTGNISDSDSKWLGTKSWPSPHRNSNSVSDRNPIGRGRLDSCRCQFPGSVECFRFHIAEARMRLKLELGLTFYDWRFHHMGEETSLQWTAEEEKRFKELATSSFNNQSQCFWNHSLKWFPLKSKKNLISYYFNVFLLRQRSYQNRVTPNSIDSDDEDVEFGCISGDFGAKAMEILGSKSVECSENRQFTDVE 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20494914 20500056 - CcPI632755_07g008800.1 Cco07g0880 183533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0880 729 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 142 722 - -
Cco07g0880 729 MobiDBLite consensus disorder prediction 504 523 - -
Cco07g0880 729 SMART ARID_2 141 233 - -
Cco07g0880 729 SMART bright_3 144 238 IPR001606 GO:0003677(InterPro)
Cco07g0880 729 Gene3D - 139 240 IPR036431 GO:0003677(InterPro)
Cco07g0880 729 ProSiteProfiles ARID domain profile. 144 237 IPR001606 GO:0003677(InterPro)
Cco07g0880 729 MobiDBLite consensus disorder prediction 549 569 - -
Cco07g0880 729 Coils Coil 294 314 - -
Cco07g0880 729 SUPERFAMILY ARID-like 148 237 IPR036431 GO:0003677(InterPro)
Cco07g0880 729 CDD ARID 150 233 - -
Cco07g0880 729 Pfam ARID/BRIGHT DNA binding domain 163 231 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0880 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0363 Cco-Chr6:4075530 Cco07g0880 Cco-Chr7:20494914 1.10E-63 dispersed
Cco06g1777 Cco-Chr6:28209785 Cco07g0880 Cco-Chr7:20494914 6.90E-23 dispersed
Cco07g0880 Cco-Chr7:20494914 Cco05g0183 Cco-Chr5:1430663 5.90E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g13 . . . . . . Bma07g01663 . . Cmo16g00656 . . . . . Cpe14g00511 . . . . . . . . Cla07g00785 Cam07g0845 Cec07g0897 Cco07g0880 Clacu07g0820 Cmu07g0824 Cre07g1181 . . Cone6ag0789 Cone9ag0791 . . . Cme07g01639 . . . Bda09g00033 . . . . . . . . Cma16g00601 . . . . . . . . . . . . . . . . . . . . Chy07g01224 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008781 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59629 PF01388 ARID 7.90E-09 CL0123 Cco TR