Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0890 ATGAGAACACTGTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAGGCTGCCCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCCAGTGATGTCCCCCGTTGTGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCGTCTCCACATTCCAAGGTTCCCAATGAGATTGGTAAAGTACATAATCAGCCACCACCGCATAAAGTGACAGTAGAAGACAACCAGCAAAATCATCATCGGCTATCACCTGTTCAAGAGGCTAACGATGATGGTCACGCCGAGACTGATACAAAAATGATCGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGATCTATGA 561 45.99 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVQEANDDGHAETDTKMIDLNMKPQRVHGQAANNQDL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20775766 20778233 + CcPI632755_07g008900.1 Cco07g0890 183543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0890 186 MobiDBLite consensus disorder prediction 150 170 - -
Cco07g0890 186 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 FunFam B-box zinc finger protein 19 2 92 - -
Cco07g0890 186 CDD Bbox1_BBX-like 4 47 IPR049808 -
Cco07g0890 186 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Cco07g0890 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 172 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cco07g0890 186 Gene3D Classic Zinc Finger 2 96 - -
Cco07g0890 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 MobiDBLite consensus disorder prediction 106 186 - -
Cco07g0890 186 MobiDBLite consensus disorder prediction 135 149 - -
Cco07g0890 186 CDD Bbox1_BBX-like 56 96 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0890 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0890 Cco-Chr7:20775766 Cco07g1085 Cco-Chr7:24391664 2.20E-21 dispersed
Cco07g0890 Cco-Chr7:20775766 Cco04g1775 Cco-Chr4:32691770 6.70E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1564 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.4 1.8e-83 306.6
Cco06g1497 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 51.4 8.8e-59 224.6
Cco06g1497 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 1.7e-67 253.4
Cco08g1564 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 8.3e-54 208.0
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 5.8e-90 328.2
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 2.9e-89 325.9
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 2.1e-87 319.7
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 3.9e-86 315.5
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 2.1e-87 319.7
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 3.9e-86 315.5
Cco02g0508 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 55.2 3.6e-51 199.1
Cco11g0413 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 53.2 1.4e-42 170.6
Cco07g1085 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 4.1e-76 282.0
Cco07g0890 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 9.6e-56 213.4
Cco04g1775 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.7e-48 187.6
Cco07g0890 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 6.4e-58 220.7
Cco04g1775 . 1 107 C2C2-CO-like Transcription Factor Family AT4G38960 82.2 1.2e-48 189.9
Cco02g0508 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 3.0e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59630 PF00643 zf-B_box 2.40E-06 No_clan Cco TF