Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0890 ATGAGAACACTGTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAGGCTGCCCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCCAGTGATGTCCCCCGTTGTGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCGTCTCCACATTCCAAGGTTCCCAATGAGATTGGTAAAGTACATAATCAGCCACCACCGCATAAAGTGACAGTAGAAGACAACCAGCAAAATCATCATCGGCTATCACCTGTTCAAGAGGCTAACGATGATGGTCACGCCGAGACTGATACAAAAATGATCGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGATCTATGA 561 45.99 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVQEANDDGHAETDTKMIDLNMKPQRVHGQAANNQDL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20775766 20778233 + CcPI632755_07g008900.1 Cco07g0890 183543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0890 186 MobiDBLite consensus disorder prediction 150 170 - -
Cco07g0890 186 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 FunFam B-box zinc finger protein 19 2 92 - -
Cco07g0890 186 CDD Bbox1_BBX-like 4 47 IPR049808 -
Cco07g0890 186 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Cco07g0890 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 172 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cco07g0890 186 Gene3D Classic Zinc Finger 2 96 - -
Cco07g0890 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Cco07g0890 186 MobiDBLite consensus disorder prediction 106 186 - -
Cco07g0890 186 MobiDBLite consensus disorder prediction 135 149 - -
Cco07g0890 186 CDD Bbox1_BBX-like 56 96 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0890 Cco-Chr7:20775766 Cco07g1085 Cco-Chr7:24391664 2.20E-21 dispersed
Cco07g0890 Cco-Chr7:20775766 Cco04g1775 Cco-Chr4:32691770 6.70E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59630 PF00643 zf-B_box 2.40E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0890 - - - 0.0