Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g0911 | ATGGAATTGGGAGGATTTGTAAGCGAGGAGAAGAAGGGAGTAGGCATTGGCGAAACCGGACAATGTCGCATATTGCATGCACCAGATCAACAACCTTCCCCATTGGAGTTAATTCAACAAGGTCCTAAATTACTTTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCGTGGCCTGCACCAGCTGTAGTTGTTTTTTGTGTTTCAGTTTGTAGCCTGGCCCTCGGGAGTCTTCGTCTTCGTTTCAGTGCTTTATCAGAAGGGATAAAGCAACTTGAACCTACCTCCTCCTGTACTTTTGGTTTGGTTCCTTCGGAGGATGAAAAGGATATATTGTTGTTAGCAACCAAGAGGATCACAATAGCAGCTGCCAGCCTCCATGTGACCCTGCAGCTCGGTAAAATAGCCGGTCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACGGTTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCTCCAACACCTACATCATCCACATCAGAACCAGCAGTTCAGGGCTCGGATGAATCCTTGGTACTTAAAAACAAGGCACCAAGATGGCACGAGCAGCTACAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACTGTGGCATCTGTTAAGAACTTCCAACTTGTTGCAGCTGTTGATCAATCTCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATCCTCCAGTTCAAAAAAATTGGAAAAGACATCTTCACCGTGGACTACCATTATCCGCTCTCGGCATTCCAAGCCTTTGCAACCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA | 858 | 47.67 | MELGGFVSEEKKGVGIGETGQCRILHAPDQQPSPLELIQQGPKLLLDIIRRVEESETSWPAPAVVVFCVSVCSLALGSLRLRFSALSEGIKQLEPTSSCTFGLVPSEDEKDILLLATKRITIAAASLHVTLQLGKIAGQAVDFALSKSLLGGPRRMQCIMQTVPVSSIQEGGTAPTPTSSTSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFKKIGKDIFTVDYHYPLSAFQAFATCLSSFDTKPACE | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 21060072 | 21061748 | + | CcPI632755_07g009110.1 | Cco07g0911 | 183564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g0911 | 285 | Pfam | Tub family | 140 | 280 | IPR000007 | - | |
Cco07g0911 | 285 | MobiDBLite | consensus disorder prediction | 167 | 189 | - | - | |
Cco07g0911 | 285 | ProSitePatterns | Tub family signature 1. | 213 | 226 | IPR018066 | - | |
Cco07g0911 | 285 | Gene3D | Tubby Protein; Chain A | 130 | 285 | IPR025659 | - | |
Cco07g0911 | 285 | PRINTS | Tubby superfamily signature | 242 | 261 | IPR000007 | - | |
Cco07g0911 | 285 | PRINTS | Tubby superfamily signature | 135 | 162 | IPR000007 | - | |
Cco07g0911 | 285 | PRINTS | Tubby superfamily signature | 213 | 229 | IPR000007 | - | |
Cco07g0911 | 285 | PRINTS | Tubby superfamily signature | 195 | 212 | IPR000007 | - | |
Cco07g0911 | 285 | PRINTS | Tubby superfamily signature | 263 | 285 | IPR000007 | - | |
Cco07g0911 | 285 | PANTHER | TUBBY-RELATED | 140 | 284 | - | - | |
Cco07g0911 | 285 | MobiDBLite | consensus disorder prediction | 167 | 188 | - | - | |
Cco07g0911 | 285 | SUPERFAMILY | Tubby C-terminal domain-like | 138 | 285 | IPR025659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0911 | Cco-Chr7:21060072 | Cco08g0447 | Cco-Chr8:10908332 | 2.70E-39 | dispersed | |
Cco04g1720 | Cco-Chr4:32309656 | Cco07g0911 | Cco-Chr7:21060072 | 1.10E-60 | wgd | |
Cco05g2127 | Cco-Chr5:30253926 | Cco07g0911 | Cco-Chr7:21060072 | 4.60E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59631 | PF01167 | Tub | 2.00E-53 | CL0395 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g0911 | K19600 | - | csv:101221704 | 252.677 |