Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0911 ATGGAATTGGGAGGATTTGTAAGCGAGGAGAAGAAGGGAGTAGGCATTGGCGAAACCGGACAATGTCGCATATTGCATGCACCAGATCAACAACCTTCCCCATTGGAGTTAATTCAACAAGGTCCTAAATTACTTTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCGTGGCCTGCACCAGCTGTAGTTGTTTTTTGTGTTTCAGTTTGTAGCCTGGCCCTCGGGAGTCTTCGTCTTCGTTTCAGTGCTTTATCAGAAGGGATAAAGCAACTTGAACCTACCTCCTCCTGTACTTTTGGTTTGGTTCCTTCGGAGGATGAAAAGGATATATTGTTGTTAGCAACCAAGAGGATCACAATAGCAGCTGCCAGCCTCCATGTGACCCTGCAGCTCGGTAAAATAGCCGGTCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACGGTTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCTCCAACACCTACATCATCCACATCAGAACCAGCAGTTCAGGGCTCGGATGAATCCTTGGTACTTAAAAACAAGGCACCAAGATGGCACGAGCAGCTACAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACTGTGGCATCTGTTAAGAACTTCCAACTTGTTGCAGCTGTTGATCAATCTCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATCCTCCAGTTCAAAAAAATTGGAAAAGACATCTTCACCGTGGACTACCATTATCCGCTCTCGGCATTCCAAGCCTTTGCAACCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 858 47.67 MELGGFVSEEKKGVGIGETGQCRILHAPDQQPSPLELIQQGPKLLLDIIRRVEESETSWPAPAVVVFCVSVCSLALGSLRLRFSALSEGIKQLEPTSSCTFGLVPSEDEKDILLLATKRITIAAASLHVTLQLGKIAGQAVDFALSKSLLGGPRRMQCIMQTVPVSSIQEGGTAPTPTSSTSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFKKIGKDIFTVDYHYPLSAFQAFATCLSSFDTKPACE 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21060072 21061748 + CcPI632755_07g009110.1 Cco07g0911 183564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0911 285 Pfam Tub family 140 280 IPR000007 -
Cco07g0911 285 MobiDBLite consensus disorder prediction 167 189 - -
Cco07g0911 285 ProSitePatterns Tub family signature 1. 213 226 IPR018066 -
Cco07g0911 285 Gene3D Tubby Protein; Chain A 130 285 IPR025659 -
Cco07g0911 285 PRINTS Tubby superfamily signature 242 261 IPR000007 -
Cco07g0911 285 PRINTS Tubby superfamily signature 135 162 IPR000007 -
Cco07g0911 285 PRINTS Tubby superfamily signature 213 229 IPR000007 -
Cco07g0911 285 PRINTS Tubby superfamily signature 195 212 IPR000007 -
Cco07g0911 285 PRINTS Tubby superfamily signature 263 285 IPR000007 -
Cco07g0911 285 PANTHER TUBBY-RELATED 140 284 - -
Cco07g0911 285 MobiDBLite consensus disorder prediction 167 188 - -
Cco07g0911 285 SUPERFAMILY Tubby C-terminal domain-like 138 285 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0911 Cco-Chr7:21060072 Cco08g0447 Cco-Chr8:10908332 2.70E-39 dispersed
Cco04g1720 Cco-Chr4:32309656 Cco07g0911 Cco-Chr7:21060072 1.10E-60 wgd
Cco05g2127 Cco-Chr5:30253926 Cco07g0911 Cco-Chr7:21060072 4.60E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59631 PF01167 Tub 2.00E-53 CL0395 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0911 K19600 - csv:101221704 252.677