Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0935 ATGACTTCTCTGTCCTTGTCTCCATTTGATTCTTCATTAAATTTTAAGACTTTCCCTTTCTCAATCCCAAAGAGTTGCGGCGACAAGAACATGGCTACGTTCGTGGAGCCACCGAACGGATTCAGATCAATGGGGAAGCATTGTTACACAATGTGGCAAACTCTCTTTGAAATTGATACTAAATATATTCCAATCAAGCCAATTGGGCGAGGAGCTTATGGTGTGGTGTGTTCTTCGATTAACCGAGAGACCAACGAGAAAGTGGCGATCAAGAAGATTCATAATGTGTTTGAGAATCGCACGGACGCCATGAGAACACTGAGGGAACTGATGCTTCTGAGGCATATAAGACATGAGAATGTGATTGCTTTGAAGGATGTGATGATGCCAATCCATAGAAAAAGCTTTAAGGATGTTTATTTGGTTTATGAACTTATGGATACGGATCTTCATCAGATTATCAAGTCCCCTCAGCCACTTTCCGATGATCATTGCAAGTACTTTATCTATCAGTTGCTCTGCGGGTTGCAGTATCTTCATTCGGCAAACATTCTTCACCGGGACTTGAAGCCCGGGAACCTCCTTGTCAATGCTAACTGCGATCTAAAGATATGCGATTTTGGGTTGGCACGAACTAGCATGGGCCGTGACCAGTTCATGACTGAGTATGTTGTTACTCGCTGGTATCGCGCTCCAGAGCTTCTCCTCTGCTGTGACAACTATGGAACTTCCATTGATGTATGGTCTGTGGGATGCATCTTTGCTGAGATTCTAGGTCGCCAACCTATTTTCCCTGGGACGGAGTGCCTCAACCAACTTAACTTAATCATCAACATTCTTGGTAGTCCAAAGGAAGCAGATATCGAGTTCATTGCCAATGGAAAGGCCAGAAATTATATCAAGGCAATGCCCTTCTCGAGAGGAATACGCCTTTCGCATCTATATCCACACGCTGAACCTTTAGCTTTAGATTTGTTACAGAAGATGCTTGTGTTTGATCCAACTAAGAGAATTACTGTCGATGAAGCACTTCAACATCCATACATGTCAGGGCTATACGACCCGAGATTCAACCCTCCTGTTGAGGTTCCCCTCACTCTTGACATTGACGACTCACTTACGGAGCCTAAGATCAGGGAAATGATGTTGAACGAGATGCTGTATTACCATCCAGAAGCTGTTTCAGGATATTATTGA 1197 43.69 MTSLSLSPFDSSLNFKTFPFSIPKSCGDKNMATFVEPPNGFRSMGKHCYTMWQTLFEIDTKYIPIKPIGRGAYGVVCSSINRETNEKVAIKKIHNVFENRTDAMRTLRELMLLRHIRHENVIALKDVMMPIHRKSFKDVYLVYELMDTDLHQIIKSPQPLSDDHCKYFIYQLLCGLQYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSMGRDQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRQPIFPGTECLNQLNLIINILGSPKEADIEFIANGKARNYIKAMPFSRGIRLSHLYPHAEPLALDLLQKMLVFDPTKRITVDEALQHPYMSGLYDPRFNPPVEVPLTLDIDDSLTEPKIREMMLNEMLYYHPEAVSGYY 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21460458 21463214 + CcPI632755_07g009350.1 Cco07g0935 183588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0935 398 FunFam Mitogen-activated protein kinase 146 375 - -
Cco07g0935 398 Gene3D Phosphorylase Kinase; domain 1 49 145 - -
Cco07g0935 398 Gene3D Transferase(Phosphotransferase) domain 1 146 370 - -
Cco07g0935 398 Pfam Protein kinase domain 65 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0935 398 ProSitePatterns MAP kinase signature. 97 200 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0935 398 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 56 387 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco07g0935 398 SUPERFAMILY Protein kinase-like (PK-like) 54 356 IPR011009 -
Cco07g0935 398 ProSitePatterns Protein kinases ATP-binding region signature. 68 92 IPR017441 GO:0005524(InterPro)
Cco07g0935 398 SMART serkin_6 62 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0935 398 ProSiteProfiles Protein kinase domain profile. 62 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0935 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0935 398 FunFam Mitogen-activated protein kinase 48 155 - -
Cco07g0935 398 CDD STKc_TEY_MAPK 56 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0935 Cco-Chr7:21460458 Cco08g1664 Cco-Chr8:28095412 3.10E-166 dispersed
Cco07g0935 Cco-Chr7:21460458 Cco01g0247 Cco-Chr1:2338710 3.10E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86971 PF00069 Pkinase 4.00E-70 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0935 K20537 - csv:101203896 701.819