Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0951 ATGGCCGGTTTTTTCCCACTAGGCGGCGCCGGAAGCAGCGGAAGAGGTTCCAATTATCATCTTCCTACTACTACTACTAGTATCACCACCAGCGGCGGCGAAATAATTCATCCCAACGAGGGGTTATTTTGGTACAAGAATTATGAGAGATTGGAAACCTGGGAAGAACAACAGCAACCGCAGGAACAAGGGGGAGAAGGATTTGTTTACTCGGGCGATGAATCGCCGGCTAGATCGTCGTTGGTGATGGTGAGATCGGGAAGAGGCGGCGGTGGAGGGCATGTAACGAGCTGCCAAGACTGTGGAAATCAAGCGAAAAAAGATTGCGTTCACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACTCACGTTAAAAGCACTTGGGTTCCCGCCTCCAAACGCCGTGACCGCCACCTCCGTTGCCTCGCCTCTAACCCCAAACGCCCTAAAGACAACCCCGCTGCTTCTTCAGGGTTGGAAATGGGGAATTTTCCGGTGGAAGTAAACTCTACGGCGGTGTTTCGGTGCGTAAGAATGACAACGTTGGACGAAACCAACGACCAATATGCGTATCAAACAGCTGTCAATATCGGAGGCCATATCTTCAAAGGCATTCTTTACGACCACGGCCCTGAACAACAACTACAACAACAGCCACCCACGTCCGCCTCCCCTGACGCCTCCGCCCTCCTCATCACCACCGCTGAATCCGCCGCATTGCTCGATCCACCTCCGCCGTACCCCACTCCTCTTTCCACCTACATCGCCACCGGTACGCAATTTTTTCTTCCCCCAACATCTTAA 819 52.26 MAGFFPLGGAGSSGRGSNYHLPTTTTSITTSGGEIIHPNEGLFWYKNYERLETWEEQQQPQEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGHVTSCQDCGNQAKKDCVHMRCRTCCKSRGFECETHVKSTWVPASKRRDRHLRCLASNPKRPKDNPAASSGLEMGNFPVEVNSTAVFRCVRMTTLDETNDQYAYQTAVNIGGHIFKGILYDHGPEQQLQQQPPTSASPDASALLITTAESAALLDPPPPYPTPLSTYIATGTQFFLPPTS 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21776844 21777770 - CcPI632755_07g009510.1 Cco07g0951 183604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0951 272 MobiDBLite consensus disorder prediction 147 167 - -
Cco07g0951 272 Pfam Domain of unknown function (DUF702) 96 217 - -
Cco07g0951 272 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 266 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cco07g0951 272 NCBIfam putative zinc finger domain, LRP1 type 97 139 IPR006510 -
Cco07g0951 272 NCBIfam LRP1 C-terminal domain 169 216 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0951 Cco-Chr7:21776844 Cco09g1462 Cco-Chr9:19842313 2.80E-41 dispersed
Cco04g1764 Cco-Chr4:32614116 Cco07g0951 Cco-Chr7:21776844 8.60E-53 wgd
Cco05g2102 Cco-Chr5:29998011 Cco07g0951 Cco-Chr7:21776844 1.60E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59635 PF05142 DUF702 1.20E-50 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0951 K27807 - csv:101216097 380.948