Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0966 ATGAACCACCAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTGCACTGAATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGTCTAAACCGAGGCGACGTCGTAAGAAGAACAGAGGATCGGATGCAGAGGCCGCGGCAGGGGGGAAAAAGAGGAAACTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTCGGGAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGTTTAGCGTCGGAGTTGGGGCTGGATCCTCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTTGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCCGTCATCGTTGAAAAATGTCGTCTAGAAACTGAGATATTGAAGCTGAAAGAACAACTATCAGAAGTAGAGAAAGAGAAAGAGAGGGTAATAATGGGAGAAGGGGGCGATGGGGGTTTAAGCAGCAGCAGCCCAAGCCCATCAATGTCATTGTCAATGGATGCGATGGACCCCACATGCCTTGGGGAAATTCCACCATCATATGAAGATGTGTTTTATTACATGCCTGAAAACTATTGTATTTATGGCATGGAATGGCCTAATCCCTACATTTGA 651 46.39 MNHQEAEEHQAVQISQLCTELYIQMVPQQGNLGESKPRRRRKKNRGSDAEAAAGGKKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVIVEKCRLETEILKLKEQLSEVEKEKERVIMGEGGDGGLSSSSPSPSMSLSMDAMDPTCLGEIPPSYEDVFYYMPENYCIYGMEWPNPYI 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22358800 22361553 + CcPI632755_07g009660.1 Cco07g0966 183619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0966 216 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677(InterPro)
Cco07g0966 216 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677(InterPro)
Cco07g0966 216 MobiDBLite consensus disorder prediction 29 59 - -
Cco07g0966 216 Pfam Homeodomain 57 110 IPR001356 GO:0003677(InterPro)
Cco07g0966 216 CDD homeodomain 56 112 IPR001356 GO:0003677(InterPro)
Cco07g0966 216 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Cco07g0966 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 159 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cco07g0966 216 Coils Coil 134 154 - -
Cco07g0966 216 SMART HOX_1 54 115 IPR001356 GO:0003677(InterPro)
Cco07g0966 216 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Cco07g0966 216 Gene3D - 48 119 - -
Cco07g0966 216 Coils Coil 103 130 - -
Cco07g0966 216 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677(InterPro)
Cco07g0966 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1694 Cco-Chr4:32120647 Cco07g0966 Cco-Chr7:22358800 1.60E-39 dispersed
Cco07g0966 Cco-Chr7:22358800 Cco10g1941 Cco-Chr10:32971895 4.00E-19 dispersed
Cco07g0966 Cco-Chr7:22358800 Cco01g1575 Cco-Chr1:28463235 1.60E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59638 PF00046 Homeodomain 4.70E-17 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0966 K09338 - csv:101221080 334.724