Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0970 ATGCCAACGGACTTAGAAAATTCCTCCAACGCTTCTGGCGAAGTCAGTATCTCCTCCACTGGCAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAAAAGCGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCTACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAACTCCGGCAACGGACTAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCTAAAAAATATGCAGTCAAGTCCGATTGGAAGGCTCATTCTAAGATTTGTGGCACCAGAGAGTACAAATGCGACTGTGAGACTGTGTTTTCGAGAAGAGATAGTTTCATCACTCACAGAGCCTTCTGTGATGCGTTGACGAAGGAGGCTGCTGGAAGTTTGTCTCCGGCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCTCATGTTCAGCCATCGGGTAGTTCGTCTCCGCCGCCTTCTGCCCCTCCTCTTTCCGCCGCGACCGGTGCCGCGCCAATAGCTCCTCCTCCATCCACTGACGCGATATCATCAATTGCGTCCATTGAGAATAAAGCCTCACCGGAAAATCCTCCGCCGCAGCTAGGAGAGGCACCGGGCAGAACTACCCTAACTGGAAACTCCGGCAGCAGCAGCAACGCTAGCGTATTGGCTAGCTTGTTTGCTTCCTCCGCCGCATCGCTGAGCTTACAGCCGCCGCAGCCACCTGCATTTTGCGACTTATTACGAGTCATGGCGCGGCCTGATCGGGCGGCTGAAATTGCACCGCCGTTGGTTTTTGAACCTCTTTCGCTGTGCCTATCGACCGACACCGAATCGTCACTTTTTCGAGCTGGAATCCAAGAGTGCCGCCCATATGTGCCACCGACACCGCCGTCCATGTCCGCCACCGGACTCCTACAGAAGGCCGCTCAAATGGGCGCTGCAGCGGCGGGCGCATCAGTGTTTCGTGGACTTGGTTTATCGTCTTCCTCTTCTTCTGCACAACAGGGGATGGGGGTGGAGGTGGTGGTAGTTGGCCATGGCAGTGGTAGTGGAGGTGATAGTTGGAGCTGGGTGAAGACGCTACTTTTGCTAATCTCCAGTGGATGCAGTTTCCTCCAACTTTGCCCCGCTCCTCATATTATCTTCAACCATCAACTCCCTCTCTCATCGATTATTTACCTAGACACCGGTTTGTTTCAGCTGCATTCTGTGGACGAATTTTCAGATACAGAGTTTGTTACTTTGTCTCCGAGTCAAAAGCATTTGCTAAAAGGGACTAAGATGCAAACAAGATCTGTTTTGAGGCTTAATACTACTATATACTCTGGTGTTCAGAAAGCAATAGCTGCTGGACATCAAAGTGGACAGTGCTATATAAACAATTTGCTGCTTGGACGAGGGGAATTGTTGACTAAGGATTGCCGGTTGTCTCATTCCTTGCCATATTCAACATTTTTGATATTGAATACTTTGAATTTTTCACCAAGATTCCTGTCCAACAGAAAGTCTATGGCTACTTCTAGTGTTAATGTTTCTGGTGATGTATATCTTGAAAATTTAGTCACAAACCGTGGAAATGCTTTAGAGCTTGCAACACCTGTGCGAGTATTTAACCATAGAAGTTATAGGAATTTCCCGAAAGCTCATATGAGTTTGAGAAGGAAACAAGCATCCAATAATTGTCTTATCTCTCGCAGTTCAATTGATGTAATGCGTGTGAAGGGCAATTGCTTTCTGCAAGTTGGGTTGACCAATCTTCATGCCTTATCTCATGCGTGCTATGCTGCTGGGACTGCTAATTCTCCAGCTTTTGACAGCAATTCTCGTGATGAACAGTTCACAAATTCAACCACTTTGTCTAGCAAAGGTTTATTAGGTGAAAGAACTCTGAAGCTGCTTTCAGGATCATGCTATCTTCCCCATCCAGCTAAAGAAGAGACGGGCGGAGAGGATGCTCATTTTATTTGTGTGGATGAACATGTAGTTGGTGTTGCGGATGGTGTAGGTGGTTGGGCAGATGTTGGCATTGATGCTGGGAAGTTTGCTCGTGAACTTATGTCGAACTCGATAAATGCCATACAGGAACAGCCTGGGGACTCAGTTGACCCTGCCAAGGTGTTAGAGAAAGCTCACTCGGGCACTACAGCCAAGGGTTCTTCAACAGCTTGCATCATTTCTCTTTCTGAAAAGGGACTCCATGCTATTAATCTGGGGGATAGTGGATTTATAGTTATAAGAGATGGAAGCACTATTTTCAGATCTCCCGTTCAGCAACATGGCTTCAATTTTACTTATCAGTTGGAGAGCGGCAATGGTGGTGATTTACCCAGCTCTGGAGAGGTTTTCATGATACCTGTCGCACCGGGGGATGTCATAGTTGCTGGAACGGATGGCTTATTCGACAATCTATACAGTAATGAGATTTCAGCTGTTGTAGTTAATGCAGTTAGATCTGGGTTGGAACCCGAAGTAACTGCCCAAAACATAGCTGCTTTAGCTCGCCAAAGAGCACTAGATAGGAACCGGCAGACCCCATTTTCTGCTGCTGCTCAAGAGGCTGGCTATCGCTACTACGGTGGTAAGCTGGATGATATCACTGTTGTTGTCTCGTATATAACAAGTTCCACAATTTTTCCATGGAGTGCAGTTGACGAAGCTGCAGAACGGTTTTTTCATCAATATCGTTCGCAACTTTCCTGA 2892 47.82 MPTDLENSSNASGEVSISSTGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDALTKEAAGSLSPAAAENPNLESDPHVQPSGSSSPPPSAPPLSAATGAAPIAPPPSTDAISSIASIENKASPENPPPQLGEAPGRTTLTGNSGSSSNASVLASLFASSAASLSLQPPQPPAFCDLLRVMARPDRAAEIAPPLVFEPLSLCLSTDTESSLFRAGIQECRPYVPPTPPSMSATGLLQKAAQMGAAAAGASVFRGLGLSSSSSSAQQGMGVEVVVVGHGSGSGGDSWSWVKTLLLLISSGCSFLQLCPAPHIIFNHQLPLSSIIYLDTGLFQLHSVDEFSDTEFVTLSPSQKHLLKGTKMQTRSVLRLNTTIYSGVQKAIAAGHQSGQCYINNLLLGRGELLTKDCRLSHSLPYSTFLILNTLNFSPRFLSNRKSMATSSVNVSGDVYLENLVTNRGNALELATPVRVFNHRSYRNFPKAHMSLRRKQASNNCLISRSSIDVMRVKGNCFLQVGLTNLHALSHACYAAGTANSPAFDSNSRDEQFTNSTTLSSKGLLGERTLKLLSGSCYLPHPAKEETGGEDAHFICVDEHVVGVADGVGGWADVGIDAGKFARELMSNSINAIQEQPGDSVDPAKVLEKAHSGTTAKGSSTACIISLSEKGLHAINLGDSGFIVIRDGSTIFRSPVQQHGFNFTYQLESGNGGDLPSSGEVFMIPVAPGDVIVAGTDGLFDNLYSNEISAVVVNAVRSGLEPEVTAQNIAALARQRALDRNRQTPFSAAAQEAGYRYYGGKLDDITVVVSYITSSTIFPWSAVDEAAERFFHQYRSQLS 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22498656 22508631 - CcPI632755_07g009700.1 Cco07g0970 183623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0970 963 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Cco07g0970 963 MobiDBLite consensus disorder prediction 1 26 - -
Cco07g0970 963 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Cco07g0970 963 SUPERFAMILY PP2C-like 702 933 IPR036457 -
Cco07g0970 963 MobiDBLite consensus disorder prediction 196 279 - -
Cco07g0970 963 ProSiteProfiles PPM-type phosphatase domain profile. 697 936 IPR001932 -
Cco07g0970 963 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 197 - -
Cco07g0970 963 Gene3D Classic Zinc Finger 41 107 - -
Cco07g0970 963 MobiDBLite consensus disorder prediction 1 44 - -
Cco07g0970 963 Gene3D - 707 828 IPR036457 -
Cco07g0970 963 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cco07g0970 963 SMART PP2C_SIG_2 696 936 IPR001932 -
Cco07g0970 963 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cco07g0970 963 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 393 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco07g0970 963 FunFam 5-azacytidine resistance protein azr1 705 830 - -
Cco07g0970 963 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Cco07g0970 963 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cco07g0970 963 SMART c2h2final6 61 83 IPR013087 -
Cco07g0970 963 SMART c2h2final6 137 157 IPR013087 -
Cco07g0970 963 Gene3D - 839 941 IPR036457 -
Cco07g0970 963 Gene3D Classic Zinc Finger 130 193 - -
Cco07g0970 963 FunFam protein indeterminate-domain 12-like 40 108 - -
Cco07g0970 963 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cco07g0970 963 SMART PP2C_4 687 934 IPR001932 -
Cco07g0970 963 MobiDBLite consensus disorder prediction 243 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2172 Cco-Chr5:30543446 Cco07g0970 Cco-Chr7:22498656 2.20E-125 dispersed
Cco07g0970 Cco-Chr7:22498656 Cco08g1706 Cco-Chr8:28416846 4.30E-89 dispersed
Cco07g0970 Cco-Chr7:22498656 Cco04g1699 Cco-Chr4:32146844 6.20E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59641 PF07228 SpoIIE 4.40E-07 CL0238 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0970 K17508 - csv:101215706 763.451