Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0971 ATGATGATTATCCTTTTAGCCTTGCTTCTATTTGTTACATGGACGAAGTTATTATTCTCCGCCGGAGCAGTTTCTGTTTGCGCAAAGAAAAACTTTGATTGCATATTTGAAGAAAAAACCTCACCTTCTTCATCGGCTCTTTCGAGTCCGATAACTTCAACAGTTGCAGAAGCTTCTCGCTGCTCATTCACCAAGAGAGAGGAACGCGCCGAAACCTTCAGGATGGACCTGGACGACCTAGACGAACAGAGTCAGGTACCATCCCGGACCTCCAGATTTGCACCCAAAGCCTCTAAGTTCAAGCCGAAACCAAAATCGGAAGTAGTTCCGAAACCGGAACCCCAACAGCCGCCAACGAAGTCGGAACCTCAACCTCCCGTTTCCAAGCCGGAAGTTGCAGAGCCGGATTCTCGAATTGGGGAGAAGAAGGAAGAAGGTGAAGAAGTTGAAGTAAAACCTAAAGTTGAACCCTCACTTCCTAATGGAGTTGCTAAAATGGACGTTGAAACTAAGTCGGAAGTTGAAGAGGAGACAATGGTGGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGTGAAATTGACGTTCTATTTACTCCTTCAGCTGATATCAATACGAAATTATATGTATTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTCGACGGGCGATGTGACGAGGTAAGAGTTAAACCTGGCACTGGAGAAGTGGAAGTCGATCTGAATGTTGATATTGAATCCAATAACTATGACAGTAAAGCTGATGACAGTTTGCAAATGAAGAAACAGACTTTGACATCTTCGTGGCAACCGCCTCTAGCTACGTCCTATGCTGTTGGGCTGCTTATGGGTAATAAGCTACACCTGAATCCCGTACATGCAGTTGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCGAAAAGGAAAAATAATGTTAGAGCTGATCCAGATGTTAAGTCAGAAGAACATGTAGATGTTAATTCTGCAGGTGCATCAAGGAAGCAGAAGAAGCAAACAGGACCTTCAACGGAACTTAAAACTGGAGATGAAGAGTCCTGGATTCCACTTAAGTACTATGGCCTAGAGAGTGATCTATCAACCAGACATCTGCGAAGCATGGTGGCACCAACAACTTCCCCTATGCAATTTTCAATGAGCCCGCACGACTATATGGACTCCTTGTGTCCTAGTACGAGTAAAAGTAGCAACAAGCCCAAAGGTCCATCTAAAAGGTATTTGCTTTCACTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACCGAGGGACCTCCGGTTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGGAGCAGAAGAGTTCATTGAAGCTCTTCAGCAATATGCTCAGTCAGTGCAGGGTCTCTGGGTTCCAAAAAGTTCAGTGCTACTTCCGCAAGATGGCAGTGGATGTTATGCTAGGGATTTTGTTCTTTCTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCACAGATAAATGTTCCAAAGTCTCTTCGGGACAAAGTGAAACATTTTTTGAATTTATTTGGTGTTGAAAGACCTGTCTTTAAGGACTGGAAATTTAAGGAGAAAACAGACCATTCATTTTTAAGTAACTACGTTGATATTGTTCAGAAGCAAGAAGAGGTCTGGAGATCTGTGGAAAAAAGGATCACTGATGCTTTCCGGGGATCTATGAAAAGCGTGTCCCATGCAAACACTGCTACAGGAAAGCCTGGCATGGTTCCTAAACCTGAAAAACAAGTTGGTAATGACAAAGCTACAACTAAAAGCAGTAATGCAGCTCTTAACCGCAAAAGTACCATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAAATCACAAGGTTTGCAGCTTTCAGTTGATATGTCAAGGTTTGCGTGATTTGGCTGTGTCCCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCCGCCGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAAAATCATAAGCCAAGTTGCTACTGAGATTCATGGTCTCTATGTCCTGACCTCATCTCCAGAGCATCCAGAATATGATCCATTAAGGAAAGTTGTCATTCAACTTTTACGTGGACGTGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCAAAGCGTGAACTTGGGAGAGTTATCAATAGTAATGAATATAGTAAGGTTATGAATGAAATTTGCGTGTCTCACGGTTCTTCTTGGGCCTTGAAGAGTGATAAACTGAATGCCATTTCCAGTGGCCTCCATCATTTGATCCACATCCAAATTTTAACTCCATGTACCATATTCCAGCGCAGGGAACCCAGTAGAAAATGCTTTGGCAGACTGAACACTCTTTAA 2442 43.2 MMIILLALLLFVTWTKLLFSAGAVSVCAKKNFDCIFEEKTSPSSSALSSPITSTVAEASRCSFTKREERAETFRMDLDDLDEQSQVPSRTSRFAPKASKFKPKPKSEVVPKPEPQQPPTKSEPQPPVSKPEVAEPDSRIGEKKEEGEEVEVKPKVEPSLPNGVAKMDVETKSEVEEETMVDDDPMEEDASEDMVVREIDVLFTPSADINTKLYVLQYPLRPRWRPYEFDGRCDEVRVKPGTGEVEVDLNVDIESNNYDSKADDSLQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNSGGPKRKNNVRADPDVKSEEHVDVNSAGASRKQKKQTGPSTELKTGDEESWIPLKYYGLESDLSTRHLRSMVAPTTSPMQFSMSPHDYMDSLCPSTSKSSNKPKGPSKRYLLSLSLEERIKKLLTEGPPVQRFSALKHYAPDYGAEEFIEALQQYAQSVQGLWVPKSSVLLPQDGSGCYARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNLFGVERPVFKDWKFKEKTDHSFLSNYVDIVQKQEEVWRSVEKRITDAFRGSMKSVSHANTATGKPGMVPKPEKQVGNDKATTKSSNAALNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRVINSNEYSKVMNEICVSHGSSWALKSDKLNAISSGLHHLIHIQILTPCTIFQRREPSRKCFGRLNTL 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22528644 22544743 + CcPI632755_07g009710.1 Cco07g0971 183624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0971 813 MobiDBLite consensus disorder prediction 399 420 - -
Cco07g0971 813 MobiDBLite consensus disorder prediction 174 188 - -
Cco07g0971 813 MobiDBLite consensus disorder prediction 321 341 - -
Cco07g0971 813 MobiDBLite consensus disorder prediction 134 154 - -
Cco07g0971 813 MobiDBLite consensus disorder prediction 310 359 - -
Cco07g0971 813 PANTHER DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5 185 773 IPR006886 GO:0005634(InterPro)|GO:0005666(PANTHER)|GO:0006351(InterPro)|GO:0042797(PANTHER)
Cco07g0971 813 MobiDBLite consensus disorder prediction 399 419 - -
Cco07g0971 813 MobiDBLite consensus disorder prediction 605 620 - -
Cco07g0971 813 MobiDBLite consensus disorder prediction 79 188 - -
Cco07g0971 813 MobiDBLite consensus disorder prediction 582 627 - -
Cco07g0971 813 Pfam RPC5 protein 191 572 IPR006886 GO:0005634(InterPro)|GO:0006351(InterPro)
Cco07g0971 813 MobiDBLite consensus disorder prediction 109 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0971 K14721 - - csv:101212587 1158.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g939 Blo04g00924 . . . Bpe15g00435 . . . . Cmo16g00709 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01282 . . . . . . . Bma03g00995 . . . . Cma16g00652 . . . . Cpe14g00556 . . . . . . . Cla07g00858 Cam07g0930 Cec07g0995 Cco07g0971 Clacu07g0904 Cmu07g0904 Cre07g1272 Lsi07g00215 Csa04g00518 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008265 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 5 1 35