Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0972 ATGTCCTTCTCCATCTCCACCCGCCATATCCGTCGCCTATCTACGGCAGCCACCGCCGCCGCCAACGCAACGGCAACGACGTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAATTAAGAACCGAGTATGACCCAGATAAAGCCCTCGACATTTACTCTTCTGTTTCCAGTCACTACACCTCCCCTGTCTCTTCTCGTTACGCTCAGGAGCTAACCATCCGGCGCCTTGCAAAGTCTCGTCGGTTCGACGAAATCGAATCCCATAAAAACGACCCGAAGATCACTCAGGAGCCATTTTTGTCCACCCTGATTCGATCCTATGGTCGAGCTGGTATGTTCGAGCACGCTATGAGGACTTATAATCAGATGGGGGATTTAGGTACTCCTCGATCCGCGATTTCCTTTAATGCCCTGTTATCTGCTTGTAACCTTTCGAAGCAATTCGACAAGGTTCCTCAACTGTTCGACGAAATTCCCAAGAAATATAATTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTTAAATCCTATTGCGACGCCGGTTCCCCTGAGAAGGCCATGCAGATTGTTAGACAGATGGAGGAAAATGGCGTGGAGGCAACTGCTGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGTGAGAGCGAAGAGGCAGAGAAAATCTGGGAACAGATGATATCAAAAGGGTGTGAACTTGATGTGGGAGCCTATAATGTTAGACTGATGCACAAGCATGGTGGCAAGCCTGAGCATGTGCAAGCTTTAATCGAGGAAATGGCTAATTCAGGTTTGAAACCAGACACAATTAGTTATAATTACTTGATGACTTGTTATTGTAAGAATGGGATGATTGACGAAGCAAAGAAGGTGTATGATGATATGGAGGCAAATGGGTGTAAAATGAATGCTGCAACTTTTAGGACATTTATATATTATCTCTGTAGAAATGGGGAGTATGAGAAAGGGTATAAGGTTTTCAAGGAGAGTGTGAAGATGCATAAGATTCCTGATTTTAACACACTGAAGTATTTGGTGGAGGGGCTGGTGGAGAAGAAGAAGATGAAAGAAGCTAAGGGTTTAATAAGGACTATAAGGAAGAAGTTCCCTCCTGACTCTTTGAAGGCTTGGAGAAAAGTTGAGGAGAGTCTTGGTTTGGCTTCTGCTGCTGCTGATGCTTCTTCTAAGGATGATGAAACTAAAACATGA 1221 44.47 MSFSISTRHIRRLSTAATAAANATATTSSSISISKAKSKLRTEYDPDKALDIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDEIESHKNDPKITQEPFLSTLIRSYGRAGMFEHAMRTYNQMGDLGTPRSAISFNALLSACNLSKQFDKVPQLFDEIPKKYNFSPNKISYGILVKSYCDAGSPEKAMQIVRQMEENGVEATAVTFTTILDALYKKGESEEAEKIWEQMISKGCELDVGAYNVRLMHKHGGKPEHVQALIEEMANSGLKPDTISYNYLMTCYCKNGMIDEAKKVYDDMEANGCKMNAATFRTFIYYLCRNGEYEKGYKVFKESVKMHKIPDFNTLKYLVEGLVEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEESLGLASAAADASSKDDETKT 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22550849 22552069 + CcPI632755_07g009720.1 Cco07g0972 183625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0972 406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Cco07g0972 406 NCBIfam pentatricopeptide repeat 310 338 IPR002885 -
Cco07g0972 406 NCBIfam pentatricopeptide repeat 102 128 IPR002885 -
Cco07g0972 406 NCBIfam pentatricopeptide repeat 170 203 IPR002885 -
Cco07g0972 406 NCBIfam pentatricopeptide repeat 134 168 IPR002885 -
Cco07g0972 406 NCBIfam pentatricopeptide repeat 274 308 IPR002885 -
Cco07g0972 406 NCBIfam pentatricopeptide repeat 205 239 IPR002885 -
Cco07g0972 406 Gene3D Tetratricopeptide repeat domain 248 406 IPR011990 GO:0005515(InterPro)
Cco07g0972 406 Gene3D Tetratricopeptide repeat domain 147 247 IPR011990 GO:0005515(InterPro)
Cco07g0972 406 Gene3D Tetratricopeptide repeat domain 7 146 IPR011990 GO:0005515(InterPro)
Cco07g0972 406 Pfam PPR repeat 102 128 IPR002885 -
Cco07g0972 406 Pfam PPR repeat 134 162 IPR002885 -
Cco07g0972 406 Pfam PPR repeat family 167 216 IPR002885 -
Cco07g0972 406 Pfam PPR repeat family 271 315 IPR002885 -
Cco07g0972 406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Cco07g0972 406 PANTHER OS01G0228400 PROTEIN 22 230 - -
Cco07g0972 406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Cco07g0972 406 SUPERFAMILY HCP-like 180 376 - -
Cco07g0972 406 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0972 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2022 Cco-Chr4:34284993 Cco07g0972 Cco-Chr7:22550849 1.70E-15 dispersed
Cco05g0042 Cco-Chr5:452172 Cco07g0972 Cco-Chr7:22550849 1.00E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28