Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0981 ATGAGTTCAACGTATGATGAGAGTGCTCTGGGGCCGGACTCTCCATCCCAGCCAGCCGCTCCACCGCCAGATCCATCGTCTTCGTCGTCACCTCCACCGTCATCGTCACCACCTTCTCCCGATCGCAACTCCGATTTCTCTCCTCCACCATCACCAGAAAACGATGATGGCTCATCCGATAAGTCCTCACCACGCCCATCAGATTCTCCATCTCCAAAGTCGCCGTCGAATGGTTCTTCCGATGATAACAAATCCCCTCCAGCTCCAAAAGAGGGTAACCAGCGATCACCGCCGCACGTTTCTCATTCTCCTCCATCCCGATCTTCGTCACCGGCAGATGCATTGCCTCCACCAGAAGGAAAGGCATCACCAAAATCGTCCGGAGCAAGACAGCAAGCAACGCCGTCGTCCGAGGGCGATTCATCACCGTCGGAGATCAACCCAGGGGTTATAATTGGGGTGGCGGTGGGGGTGGGCGTTTTCATAATTGTTCTCATATCAATAATTGCAGTGTGTTCAAAGAAGAAGAAGAGAAAGGGAGATCCTATGCAATATTATGGAGATCATGGTCATGGACCTAAAGGTGGTGACTATTACAACAGTTCACAGCAACAGAACTGGCACAACGGCATGCACGGTCCAGGGACGGATCAATTTGGGAGGCCACCGGTATCGGGGTCTCCAGCCGGGAACGGGTGGCCAATGAGTGGCGACAACATGACGACGGGCAGCACCTACACGGGGCCTCCTCTTCCTCCGCCATCACCATCGATCGCCTTTGGGTTCAACAAGAGCACGTTCACCTACGACGAACTCGCAGCAGCAACAGGTGGGTTCGCACACGGGAACCTGCTCGGGCAGGGCGGGTTCGGGTATGTGCACAAGGGGGTGCTGCCCAATGGGAAGGAGGTGGCCGTTAAGAGCCTGAAGGTGGGCAGCGGGCAGGGTGAGAGGGAGTTCATGGCTGAAGTTGAGATTATTAGCAGAGTCCATCATCGGCATTTGGTTTCCTTGGTTGGCTTTTGCATTGCCGGTGGACAAAGAATGTTGGTCTATGAGTTTGTTCCTAACAACACCTTGGAACATCACCTTCATGGCAAAGGTCTCCCAGTAATGGATTGGCCAACCAGACTTCGTATTGCAATAGGTTCTGCCAAGGGTCTTGCTTATCTCCATGAAGATTGTCATCCAAAGATTATTCATCGAGATATCAAGTCAGCTAATATTCTGATCGATGCCAATTTTGAAGCAATGGTGGCTGATTTTGGATTGGCTAAGCTATCCTCAGATAATCATACACATGTCTCCACTAGAGTCATGGGTACATTCGGGTATTTGGCACCAGAATATGCATCAAGTGGAAAGCTGACAGAAAAATCTGATGTATTCTCGTTCGGTGTAATGTTGTTGGAACTCATCACAGGAAAACGACCCGTAGATCCTACTCAAGCCATGGAGGATAGCTTAGTTGATTGGGCTCGACCACTAATGAGCCGGGCATTGATGGAAGGCATCTACGAGGAGTTGGTGGATGTGCGTTTAGAGAATGACTTCAACGCACAAGAAATGGCTCGCATGGTGGCTTGTGCTGCAGCCTCCATTCGCCACTCGGCTAGAAAACGCCCCAAAATGAGCCAGGTGGTTCGAGCCTTAGAAGGAGATGTTTCCTTGGACGACTTAAACGAAGGCATAAGACCGGGGCAAAGCTCCATCTATAGCGCCGCTAGCTCCGATTACGACTCCAGCGCCTACCATGCCGACATGTCGAAATTCAGGAAGATCGCTTTGTCGGACGACAGTAGTGAACTCGCCACTTCCAGCAACGACTCCAGAGAGATGAACCATCCCGGCCCGGGGACCCAAAGGCCGCTCTTTTGA 1878 51.86 MSSTYDESALGPDSPSQPAAPPPDPSSSSSPPPSSSPPSPDRNSDFSPPPSPENDDGSSDKSSPRPSDSPSPKSPSNGSSDDNKSPPAPKEGNQRSPPHVSHSPPSRSSSPADALPPPEGKASPKSSGARQQATPSSEGDSSPSEINPGVIIGVAVGVGVFIIVLISIIAVCSKKKKRKGDPMQYYGDHGHGPKGGDYYNSSQQQNWHNGMHGPGTDQFGRPPVSGSPAGNGWPMSGDNMTTGSTYTGPPLPPPSPSIAFGFNKSTFTYDELAAATGGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHGKGLPVMDWPTRLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSSDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTQAMEDSLVDWARPLMSRALMEGIYEELVDVRLENDFNAQEMARMVACAAASIRHSARKRPKMSQVVRALEGDVSLDDLNEGIRPGQSSIYSAASSDYDSSAYHADMSKFRKIALSDDSSELATSSNDSREMNHPGPGTQRPLF 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22619000 22625546 + CcPI632755_07g009810.1 Cco07g0981 183634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0981 625 Gene3D Phosphorylase Kinase; domain 1 255 354 - -
Cco07g0981 625 Gene3D Transferase(Phosphotransferase) domain 1 355 562 - -
Cco07g0981 625 MobiDBLite consensus disorder prediction 125 144 - -
Cco07g0981 625 CDD STKc_IRAK 285 553 - -
Cco07g0981 625 MobiDBLite consensus disorder prediction 15 47 - -
Cco07g0981 625 MobiDBLite consensus disorder prediction 48 109 - -
Cco07g0981 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0981 625 FunFam proline-rich receptor-like protein kinase PERK1 257 354 - -
Cco07g0981 625 FunFam Proline-rich receptor-like protein kinase PERK1 355 562 - -
Cco07g0981 625 MobiDBLite consensus disorder prediction 1 146 - -
Cco07g0981 625 MobiDBLite consensus disorder prediction 232 246 - -
Cco07g0981 625 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 122 594 IPR047117 -
Cco07g0981 625 Pfam Protein tyrosine and serine/threonine kinase 283 550 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g0981 625 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524(InterPro)
Cco07g0981 625 MobiDBLite consensus disorder prediction 210 252 - -
Cco07g0981 625 MobiDBLite consensus disorder prediction 599 625 - -
Cco07g0981 625 MobiDBLite consensus disorder prediction 599 615 - -
Cco07g0981 625 SUPERFAMILY Protein kinase-like (PK-like) 253 551 IPR011009 -
Cco07g0981 625 SMART serkin_6 279 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g0981 625 ProSiteProfiles Protein kinase domain profile. 279 557 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0981 Cco-Chr7:22619000 Cco11g0459 Cco-Chr11:4829412 1.00E-168 dispersed
Cco04g1777 Cco-Chr4:32703059 Cco07g0981 Cco-Chr7:22619000 5.70E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86972 PF07714 PK_Tyr_Ser-Thr 2.20E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0981 - - - 0.0