Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g0982 ATGTGCGACCGCCATCTTTCTCGCCGCGGACCTCTACCAAAACTAAGTCATAGCTCTAGCCACATCATTCAAAGGGATTTTGGGAGCTTGAGGCACAACATTGCATATGTTGGACTGAAGTTCGCTCGATTTGCTTTTGTGCATTTGGTTCCTTCTGCTTCTGGATTTTCGTCTTCGTATTTGTTGACCGGGCTGAAAATGGCTGTAGAGGAGAAACCAAGAGCCGATAATTCCGCAGAGTCCCCGACTTCGGTTCTGGAAGACGAGGACTTATGTAATGGGGAAAAGGAGATCAAGTTGGAGGAAGAGATAATTTTGGAAGCAAAAAATGGGGATTCCAGTCTTATATCAAAAGAAATGGCTGAGGAGGAACAGAAATTGCTGGAAGCTCGAGTTAAGGAAGAGGAGGCAAAAAGACTTGAGGATTCAACAGCATCTGCAAAGTTGAATGACAATCAGTTCACCAAATTGGATGAACTTCTCACTCAAACACAGTTATACTCAGAATTTTTGTTGGAGAAAATGGATGACATCACATTTAATGGAGTGGAGGAAGATAAGAAATCTGTTGAGAAAAGTAGTGGGCGTGGTTCAAAGAGGAAAACTGCTGCTCGTTATAATAATAGGAAGGCGAAAAGGGCTGTTGCAGCTATGCTGACTAGATCAAAAGAAGGTGAGCGGGATGAAGATGTAAACTTGACCGAGGAAGAAAGAATTGAGAAGGAGCAGAGTGAACTTGTACCTCTATTGACTGGTGGCAAGTTGAAGTCCTACCAACTCAAAGGTGTCAAATGGTTGATTTCGTTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACCATTGGCTTCCTTGCACATTTGAAGGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCTCTTTCCACACTTTCAAATTGGATAAATGAAATATCGAGATTTGTGCCCACCATGACTGCTATTATTTATCATGGTGATAAAAAACAAAGGGAAGAGATTCGAAGAAAGTCCATGCCTAGAACGGTTGGACCTAAATTCCCCATAGTGGTTACTTCTTATGAGATTGCAATGAGTGATGCTAAAAAATTTTTGAGGCATTACAATTGGAAATATCTTGTCGTTGATGAGGGGCATAGACTGAAAAACTCAAAATGCAAATTGCTGAAGGAGTTGAAGTACATAGCTGTTGAAAATAAACTGCTTCTAACTGGGACACCACTGCAGAATAATTTGGCAGAGCTTTGGTCATTGTTGAACTTTATTTTACCAGATATTTTTTCGTCCAATGAGGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGTGTCATGCTGAGGAAAAAGAAGAAACACAAGAGAATAGAAAGGCCCAGGTGGTAGCAAAACTGCATGGAATACTGAGACCATTCTTACTTCGGAGAATGAAATCTGATGTTGAGCTAATGCTCCCTCGGAAGAAAGAAATCATAATGTATGCAAACATGACCGAATATCAGAAGAACTTTCAGGAACATTTAGTTAACAAGACATTGGAAAATCATCTCTCTGAGAAGGGATCAGGACATGGTTTTAAAGGAAAACTTAACAATCTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCTGATCTCTTGGAATCGGTCTTTGATGAATCCTATACGTATCCTCCTGTAGAGCAGCTAGTTGAGCAGTGTGGAAAATTTCGCTTACTGGATAGATTGTTGACACGGCTATTTGCACGCAAGCATAAAGTCCTTATTTTCTCGCAATGGACTAAGATTTTGGATATCATGGACTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATAGATGGTGGCGTGAAACTAGATGAAAGGAAAAGACAGATCCAGGAGTTCAATGATGTTAATAGCAGCCACAGGATATTTATTCTTAGTACCCGGGCTGGTGGTCTGGGTATCAACCTCACTGCAGCAGATACTTGTATACTCTATGATAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGGTGTCACAGGATAGGTCAAACGAAACCTGTACACGTTTACAGACTTGCAACAGCTCAGTCTATAGAGGGCCGCATTCTGAAGAGGGCCTTTAGTAAGTTGAAGCTAGAGCATGTGGTCATTGAAAAGGGGCAATTTCACCAGGAACGAACAAAACCCAACCCTGGAGATATTGTAGAGGAAGAGGATCTACTAGCACTACTAAGAGAGGAAGATTCTGCTGAAGACAAGATGATACAGACAGACATTAGCGACGCCGATTTAGAGCGTATTTTAGACCGCTCTGATCTGATTGCCCCATCTGGTTCAGACAATGAGAAATCTAAAGTTTCTGGCGATTTATACCCTCTGAAAGGGCCTGGTTGGGAGGTGGTGACACCAACTTCAACAGGAGGGGTACTCTCTACCCTTAACTCTTAA 2472 41.87 MCDRHLSRRGPLPKLSHSSSHIIQRDFGSLRHNIAYVGLKFARFAFVHLVPSASGFSSSYLLTGLKMAVEEKPRADNSAESPTSVLEDEDLCNGEKEIKLEEEIILEAKNGDSSLISKEMAEEEQKLLEARVKEEEAKRLEDSTASAKLNDNQFTKLDELLTQTQLYSEFLLEKMDDITFNGVEEDKKSVEKSSGRGSKRKTAARYNNRKAKRAVAAMLTRSKEGERDEDVNLTEEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPTMTAIIYHGDKKQREEIRRKSMPRTVGPKFPIVVTSYEIAMSDAKKFLRHYNWKYLVVDEGHRLKNSKCKLLKELKYIAVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSNEEFESWFDLSGKCHAEEKEETQENRKAQVVAKLHGILRPFLLRRMKSDVELMLPRKKEIIMYANMTEYQKNFQEHLVNKTLENHLSEKGSGHGFKGKLNNLMVQLRKNCNHPDLLESVFDESYTYPPVEQLVEQCGKFRLLDRLLTRLFARKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDVNSSHRIFILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRILKRAFSKLKLEHVVIEKGQFHQERTKPNPGDIVEEEDLLALLREEDSAEDKMIQTDISDADLERILDRSDLIAPSGSDNEKSKVSGDLYPLKGPGWEVVTPTSTGGVLSTLNS 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22627798 22640113 + CcPI632755_07g009820.1 Cco07g0982 183635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g0982 823 Pfam SNF2-related domain 258 554 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cco07g0982 823 Coils Coil 118 140 - -
Cco07g0982 823 SMART ultradead3 251 446 IPR014001 -
Cco07g0982 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 776 IPR027417 -
Cco07g0982 823 SMART helicmild6 606 690 IPR001650 -
Cco07g0982 823 Gene3D - 256 485 IPR038718 -
Cco07g0982 823 CDD SF2_C_SNF 566 700 IPR049730 -
Cco07g0982 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 267 435 IPR014001 -
Cco07g0982 823 FunFam Chromatin complex subunit A 106 494 721 - -
Cco07g0982 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 580 743 IPR001650 -
Cco07g0982 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 484 IPR027417 -
Cco07g0982 823 Pfam Helicase conserved C-terminal domain 577 690 IPR001650 -
Cco07g0982 823 FunFam ATP-dependent DNA helicase DDM1 249 493 - -
Cco07g0982 823 PANTHER SNF2/RAD54 HELICASE FAMILY 117 782 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0008094(PANTHER)|GO:0044030(PANTHER)
Cco07g0982 823 Gene3D - 490 791 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g0982 K19001 - - csv:101214753 1388.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0607 Cco-Chr6:6617304 Cco07g0982 Cco-Chr7:22627798 4.60E-119 dispersed
Cco07g0116 Cco-Chr7:1238259 Cco07g0982 Cco-Chr7:22627798 1.60E-72 dispersed
Cco07g0982 Cco-Chr7:22627798 Cco10g1727 Cco-Chr10:30832316 4.00E-83 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59643 PF00176 SNF2_N 2.60E-64 CL0023 Cco TR