Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1001 ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATATCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCGAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAAAGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCAAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTGGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTCCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 675 47.41 MSGHKRNFTTTAAVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSLGNQNQNQGNQKSFNIIDGVGFGESLRSSNMNGVHENGEGNRARAMAAHLQQSSGW 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22986281 22986955 - CcPI632755_07g010010.1 Cco07g1001 183654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1001 224 FunFam Nuclear transcription factor Y subunit B-3 25 148 - -
Cco07g1001 224 MobiDBLite consensus disorder prediction 126 145 - -
Cco07g1001 224 Gene3D Histone, subunit A 23 156 IPR009072 GO:0046982(InterPro)
Cco07g1001 224 MobiDBLite consensus disorder prediction 1 32 - -
Cco07g1001 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 172 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cco07g1001 224 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Cco07g1001 224 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Cco07g1001 224 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Cco07g1001 224 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g1001 224 Coils Coil 112 132 - -
Cco07g1001 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Cco07g1001 224 SUPERFAMILY Histone-fold 33 135 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1001 K08065 - - csv:101214273 404.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1012 Cco-Chr2:12859534 Cco07g1001 Cco-Chr7:22986281 1.70E-46 dispersed
Cco07g1001 Cco-Chr7:22986281 Cco10g0413 Cco-Chr10:4919341 4.60E-42 dispersed
Cco07g1001 Cco-Chr7:22986281 Cco10g2051 Cco-Chr10:33891831 1.70E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0431 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.1e-49 190.7
Cco02g1012 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.2e-38 154.5
Cco10g0413 . 6 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.6 6.1e-37 151.4
Cco10g0431 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Cco07g1001 . 9 137 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Cco02g1012 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cco10g0413 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.8 1.1e-50 196.4
Cco07g1001 . 28 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.9e-47 184.1
Cco10g2051 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.3e-43 172.9
Cco02g1497 . 397 510 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.1 3.0e-43 171.8
Cco09g0586 . 44 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Cco02g1497 . 384 500 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Cco10g2051 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.0e-48 188.3
Cco02g1012 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cco10g0413 . 8 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.7e-41 165.2
Cco07g1001 . 15 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Cco09g0586 . 32 135 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.2e-38 156.4
Cco09g0586 . 42 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Cco10g0413 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.5e-39 159.5
Cco02g1012 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Cco07g1001 . 31 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Cco10g2051 . 1 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.3 3.4e-61 231.5
Cco02g1497 . 390 549 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 4.8e-55 211.1
Cco02g1012 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cco07g1001 . 30 135 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Cco10g0413 . 2 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.8 3.9e-41 164.9
Cco09g0586 . 43 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.7e-37 150.6
Cco07g1001 . 18 132 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Cco02g1012 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Cco10g2051 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.3e-41 166.8
Cco10g0413 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.2e-41 166.0
Cco02g1497 . 410 504 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Cco09g0586 . 20 144 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.7e-39 159.1
Cco02g1012 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.2e-52 201.4
Cco10g0413 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.3 1.0e-50 196.8
Cco07g1001 . 26 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.4e-45 177.2
Cco02g1497 . 410 520 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 6.0e-43 171.0
Cco10g2051 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 5.1e-42 167.9
Cco09g0586 . 44 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cco10g2051 . 12 170 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.9 1.4e-57 219.5
Cco02g1497 . 395 548 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.8 8.3e-55 210.3
Cco02g1012 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Cco10g0413 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.4e-41 166.4
Cco07g1001 . 19 123 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Cco09g0586 . 43 145 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010325 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 0 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59645 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cco TF