Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1001 ATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGTCAGTCCCATCGGCAGCCCCACCTCCGGCAACATATCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATTGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCGAAAGAGACCGTCCAGGAATGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAAAGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCACCGAACAAATTATTGGTGGGAAATCGGCAAATTCGGTGATGGATTTTCAGAATTTCAATCCTGGGTTTTATTCATTGGGAAATCAAAATCAAAATCAGGGGAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGAGTTCCAATATGAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 675 47.41 MSGHKRNFTTTAAVSPIGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSATEQIIGGKSANSVMDFQNFNPGFYSLGNQNQNQGNQKSFNIIDGVGFGESLRSSNMNGVHENGEGNRARAMAAHLQQSSGW 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22986281 22986955 - CcPI632755_07g010010.1 Cco07g1001 183654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1001 224 FunFam Nuclear transcription factor Y subunit B-3 25 148 - -
Cco07g1001 224 MobiDBLite consensus disorder prediction 126 145 - -
Cco07g1001 224 Gene3D Histone, subunit A 23 156 IPR009072 GO:0046982(InterPro)
Cco07g1001 224 MobiDBLite consensus disorder prediction 1 32 - -
Cco07g1001 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 172 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cco07g1001 224 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Cco07g1001 224 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Cco07g1001 224 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Cco07g1001 224 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g1001 224 Coils Coil 112 132 - -
Cco07g1001 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Cco07g1001 224 SUPERFAMILY Histone-fold 33 135 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1012 Cco-Chr2:12859534 Cco07g1001 Cco-Chr7:22986281 1.70E-46 dispersed
Cco07g1001 Cco-Chr7:22986281 Cco10g0413 Cco-Chr10:4919341 4.60E-42 dispersed
Cco07g1001 Cco-Chr7:22986281 Cco10g2051 Cco-Chr10:33891831 1.70E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59645 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1001 K08065 - csv:101214273 404.445