Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1002 ATGAAGAAACGGCTAAATGGGGGTTTGGTCTTGCTCTGGTTCATCTTTATGGGGCAATTCTATACCAATGCGTCGGCAACTGTAGAAGCTACTGCTCTGCACATATTTCGATTGAATTTGGAAGATCCAAACAATGTTCTGCAGAGTTGGGATCCCACCCTTGTTAATCCCTGCACTTGGTTTCATGTCACTTGCAACAATGAAAATAACATTATAAGAGTCGACCTTGGAAATGCTGGATTGTCTGGTAAATTAGTACCACAGCTTGGTCAACTTAAAAGTCTTCAATACTTGGAGCTCTATGGCAACGACATAAGTGGAGAGATTCCAGATGAGCTCGGGAATCTGGAAAATTTGGTGAGCCTAGACCTTTACTTGAACGGTTTAACTGGCCCGATTCCAGACACGTTTGGCAAGCTCACACAATTGCGTTTCCTTCGGCTAAATGACAACAAACTATCTGGCTTGATTCCGATTTCCTTGACTAATATTTCCACCCTGCAAGTCTTGGATCTATCAAACAACCTTTTATCTGGAAAGGTTCCAAATAATGGCTCATTTTCACTATTTACTCCCATCAGTTTTGCAAATAACTTGGATCTATGTGGTCTGGTGACTGGGAAACCTTGCCCTGGGGATCCTCCCTTTTCTCCACCACCGCCATTTGTTCCACAGTCAACATTTTCTTCCCATGAAGTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTTGCTGCAGGTGCTGCTTTACTCTTTGCCACTCCGGCTATCATATTTGTCTATTGGCATCGGAGGAGATCACGAGAAATATTCTTCGATGTACCAGCAGAAGAAGATTCAGAGATCAACTTGGGGCAGCTGAAACGGTTTTCTCTGAGAGACTTACAAGTTGCAACAGATAACTTCTGCAACAAAAATATTCTCGGTCGAGGTGGATTCGGTAAAGTCTATAGGGGACGTCTAGCTGATGGCTCATTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACGCCAGGTGGAGAGTTGCAGTTCCAAACAGAAGTAGAGATGATTAGCATGGCAGTGCATCGGAATCTTTTGCAACTACATGGATTTTGTACAACATCAAGTGAACGCCTCCTTGTCTATCCTTATATGGCCAATGGAAGTGTTGCATCATGTTTAAGAGAACGTCCACAATCTGAAGCTCCTCTGGACTGGCCAACTCGAAAGAAAGTTGCATTAGGTTCTGCAAGGGGCCTTTCTTATTTACATGATGGATGTGATCCGAAAATCATCCATCGTGATGTGAAGGCTGCAAATATTTTACTGGATGAGGAATTTGAGGCTGTCGTCGGCGACTTTGGTCTCGCAAAGTTAATGGACTACAAGGATACTCATGTTACAACCGCAGTAAGAGGTACTATTGGGCATATAGCTCCAGAGTATCTCTCAACTGGGAAATCATCTGAAAAAACCGATGTTTTTGGTTATGGCATTATGCTCTTGGAGCTAATAACTGGACAGAGGGCTTTCGATCTTGCTCGACTGGCAAACGATGAAGATGTTATGCTGCTTGATTGGGTCAAAGGCCTTCTGAAAGAGAAAAAGTTGGAGATGTTGGTTGACCCTGATCTGAAGGACAACTATGATGAAATTGAAGTTGAGCAAATAATCCAAGTAGCACTTCTCTGCACACAGAGCTCGCCTATGGAACGGCCGAAAATGTCTGATGTGGTCAGAATGCTCGAAGGAGACGGCTTGACTGAGCGATGGGAGGAATGGCAGAGAGTCGAGGTAGTCTATCATGAAACAGAATTAGCATCTTCTCAAACTTCTGAATGGATGGTCGATTCGACTGAAAACGTTCGTGCTTTTGAATTATCTGGTCCTAGATAA 1878 43.5 MKKRLNGGLVLLWFIFMGQFYTNASATVEATALHIFRLNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGKLVPQLGQLKSLQYLELYGNDISGEIPDELGNLENLVSLDLYLNGLTGPIPDTFGKLTQLRFLRLNDNKLSGLIPISLTNISTLQVLDLSNNLLSGKVPNNGSFSLFTPISFANNLDLCGLVTGKPCPGDPPFSPPPPFVPQSTFSSHEVNNPNGAIVGGVAAGAALLFATPAIIFVYWHRRRSREIFFDVPAEEDSEINLGQLKRFSLRDLQVATDNFCNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLQLHGFCTTSSERLLVYPYMANGSVASCLRERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLEMLVDPDLKDNYDEIEVEQIIQVALLCTQSSPMERPKMSDVVRMLEGDGLTERWEEWQRVEVVYHETELASSQTSEWMVDSTENVRAFELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23021312 23025345 + CcPI632755_07g010020.1 Cco07g1002 183655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1002 625 SMART serkin_6 302 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1002 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Cco07g1002 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 625 - -
Cco07g1002 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1002 625 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cco07g1002 625 Pfam Leucine Rich Repeat 167 184 IPR001611 GO:0005515(InterPro)
Cco07g1002 625 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cco07g1002 625 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Cco07g1002 625 SUPERFAMILY Protein kinase-like (PK-like) 282 577 IPR011009 -
Cco07g1002 625 Gene3D Ribonuclease Inhibitor 26 212 IPR032675 -
Cco07g1002 625 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Cco07g1002 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1002 625 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Cco07g1002 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Cco07g1002 625 FunFam Somatic embryogenesis receptor-like kinase 1 379 596 - -
Cco07g1002 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524(InterPro)
Cco07g1002 625 Pfam Protein tyrosine and serine/threonine kinase 305 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1002 625 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Cco07g1002 625 SUPERFAMILY L domain-like 29 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1002 Cco-Chr7:23021312 Cco08g0388 Cco-Chr8:8528772 1.30E-243 dispersed
Cco07g1002 Cco-Chr7:23021312 Cco07g1802 Cco-Chr7:32152248 1.90E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86973 PF07714 PK_Tyr_Ser-Thr 1.80E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1002 K13418 - csv:101208905 1111.67