Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1009 ATGAACTCATCATCCACAAAATTTTACAATCCAGGAAGGATGGGATTGTATGAACCTCTCCACCATATTGGAATGTGGGGAGAAACTTTTAGAACCAGTGCCAATTTAGATGCACAATCCTCCTTTATTATTGAAGCTGATACCAAGCTAGAAACTCAGTCGGATGATGCTTCACTCGGCTCACTTGGAGATCCTCATGTATATGACCAAGATGATACCAAACGCATTGATAAGATTCAAAGACGGCTGGCACAAAATCGGGAAGCAGCTCGCAAAAGCCGGCTGCGGAAAAAGGCCTATATTAAGCAATTGGAAACAAGCCGTGTAAAACTCATTCAATTGGAGCAAGAGCTTGAAAAGGCAAGACAACAAGGTCTCTTGGCTGGATCCCGATTTGACAATAACCAGTTGGGTTTATCAGGAACCACAAATTCAGGCATCTCCGCATTTGAATCAGAGTATGAGCAATGGGTGGAGGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATTACTGATATCGAGCTTCGAATACTTGTCGAAAATGCAATGAGACACTACTTTAAATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACATCGGCCGAAAGACTTTTCTTATGGATTGGAGGATTTCGACCTTCAGAACTCCTCAAGGTTTTGATACCTCAGCTGGAGACATTAACCGAACAACAAATTTCGGAAACTGGTAGCCTTAGGAAATCTTGTCTACAAGCAGAAGATGCTCTTAGACAAGGTATGGAAAAACTACAACAAAATCTATTTGAGAGCGTAGTGGCTGGTCAGCTGGGTGAAGGAAGTCATCCTCTACAAATGACTGCTGCAATGGAGAGATTAGAAGCGCTCATTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACGACTCGACAATCTGCTCAAGGCCTTCTTATTCTTGGGGAGTTTTTCCAACGACTCCGAGCATTGAGCTCACTTTGGGCTAATCGTCCTTGTGAGCCTGCATAG 1089 43.07 MNSSSTKFYNPGRMGLYEPLHHIGMWGETFRTSANLDAQSSFIIEADTKLETQSDDASLGSLGDPHVYDQDDTKRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRVKLIQLEQELEKARQQGLLAGSRFDNNQLGLSGTTNSGISAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTEQQISETGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSHPLQMTAAMERLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLILGEFFQRLRALSSLWANRPCEPA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23117585 23123356 - CcPI632755_07g010090.1 Cco07g1009 183662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1009 362 Gene3D - 77 127 - -
Cco07g1009 362 Coils Coil 97 124 - -
Cco07g1009 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1009 362 PANTHER TRANSCRIPTION FACTOR TGA9 2 361 - -
Cco07g1009 362 FunFam BZIP family transcription factor 77 126 - -
Cco07g1009 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1009 362 SMART brlzneu 74 136 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1009 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco07g1009 362 SUPERFAMILY Leucine zipper domain 79 120 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco07g1009 362 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco07g1009 362 Pfam bZIP transcription factor 77 115 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1009 Cco-Chr7:23117585 Cco11g0792 Cco-Chr11:9033724 2.20E-94 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59648 PF14144 DOG1 1.80E-28 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1009 K14431 - csv:116401613 682.945