Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1016 ATGCGCGGCAGACGCCGAATCGAGGATGACAATGGTGAATTGAGGAGGAGGAGGACGATGGATGGCTCTCTCCGGTTATCTGCAGCAAGGGAAGAAAATCAAGTAGAATCATTCAGAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACGTCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAACTAAGGTTATTCGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTGTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTAGTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCATAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA 1065 42.72 MRGRRRIEDDNGELRRRRTMDGSLRLSAAREENQVESFRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDCCEKNLLDTLARITQRKKDLLSSHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTIVYDQVSQATNINVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23251817 23261464 + CcPI632755_07g010160.1 Cco07g1016 183669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1016 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 71 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 Gene3D - 38 103 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 ProSiteProfiles MADS-box domain profile. 39 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 MobiDBLite consensus disorder prediction 323 354 - -
Cco07g1016 354 Coils Coil 129 149 - -
Cco07g1016 354 SUPERFAMILY SRF-like 39 99 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 SMART madsneu2 14 74 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 PANTHER SERUM RESPONSE FACTOR HOMOLOG 39 226 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1016 Cco-Chr7:23251817 Cco08g0096 Cco-Chr8:1584628 1.50E-10 dispersed
Cco07g1016 Cco-Chr7:23251817 Cco05g2687 Cco-Chr5:34847549 5.40E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59649 PF00319 SRF-TF 4.90E-14 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1016 - - - 0.0