Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1016 ATGCGCGGCAGACGCCGAATCGAGGATGACAATGGTGAATTGAGGAGGAGGAGGACGATGGATGGCTCTCTCCGGTTATCTGCAGCAAGGGAAGAAAATCAAGTAGAATCATTCAGAAATGGACTCATCAAAAAGGCTTATGAACTCTCTGTTCTTTGCGATATTGATATTGCTCTTATTATGTTCTCTCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCCGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTCCAACTTGTCAATCCTACGTCAAGCAACTCCAATGTTGAGGAGCTTCAACAAGAGGTCGGTACATTGAGACATGAGCTGCAACTTGCGGAGCAGCAACTAAGGTTATTCGAACCGGATCCTCTTTCATTCACATCGAATGGTGAAATAGATTGTTGTGAGAAGAATCTTTTAGACACTTTGGCGCGGATCACCCAAAGAAAGAAAGATTTATTAAGTAGTCACTTATCTCCTTATGATCGTCCAAATGGGATTCAGCTATATTTGGATTCAAAAGACGGAATACCAACATCTTTTGAAACCGATGTTGCAAATTGGTTGCCCGAAAATGGCCAGAACTCGTCCCAGATTTGTGTTGCATCTGAGTCATCTTCGATTCCTCAAAGTGGTCAATATCCAACCATAGTTTATGATCAAGTATCACAAGCAACAAACATTAATGTTGGGTCATGTAACATTGGTGGGTGCGACATTGGAATCCCCAACGATGATGGTTACTCTCCTTGGCATCACAACTACACCACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCCTTTGATACTTTGAAGCATGACATTGGAGAACCTTGTATGAATACAATGATGTCGCAACAACAAGTTGATAGCATTTCAAATGGGAATCAAATGCCTCTAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGACTAA 1065 42.72 MRGRRRIEDDNGELRRRRTMDGSLRLSAAREENQVESFRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNVEELQQEVGTLRHELQLAEQQLRLFEPDPLSFTSNGEIDCCEKNLLDTLARITQRKKDLLSSHLSPYDRPNGIQLYLDSKDGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPTIVYDQVSQATNINVGSCNIGGCDIGIPNDDGYSPWHHNYTTTQLLSSFIPQTSFDTLKHDIGEPCMNTMMSQQQVDSISNGNQMPLSDGSANYDNGKLPQLNVD 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23251817 23261464 + CcPI632755_07g010160.1 Cco07g1016 183669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1016 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 71 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 Gene3D - 38 103 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 ProSiteProfiles MADS-box domain profile. 39 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 MobiDBLite consensus disorder prediction 323 354 - -
Cco07g1016 354 Coils Coil 129 149 - -
Cco07g1016 354 SUPERFAMILY SRF-like 39 99 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 SMART madsneu2 14 74 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco07g1016 354 PANTHER SERUM RESPONSE FACTOR HOMOLOG 39 226 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1016 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1016 Cco-Chr7:23251817 Cco08g0096 Cco-Chr8:1584628 1.50E-10 dispersed
Cco07g1016 Cco-Chr7:23251817 Cco05g2687 Cco-Chr5:34847549 5.40E-13 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0973 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 7.3e-51 198.0
Cco07g1016 . 41 225 Type I MADS-box Gene Family AT1G77950 51.0 2.0e-41 166.4
Cco03g1853 . 1 167 Type I MADS-box Gene Family AT5G48670 63.5 5.2e-55 211.8
Cco01g1113 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cco10g0973 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 7.3e-51 198.0
Cco07g1016 . 41 225 Type I MADS-box Gene Family AT1G77950 51.0 2.0e-41 166.4
Cco03g1853 . 1 167 Type I MADS-box Gene Family AT5G48670 63.5 5.2e-55 211.8
Cco01g1113 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cco10g0973 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 7.3e-51 198.0
Cco03g1853 . 1 167 Type I MADS-box Gene Family AT5G48670 63.5 5.2e-55 211.8
Cco01g1113 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cco07g1016 . 41 225 Type I MADS-box Gene Family AT1G77950 51.0 2.0e-41 166.4
Cco10g0973 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 7.3e-51 198.0
Cco03g1853 . 1 167 Type I MADS-box Gene Family AT5G48670 63.5 5.2e-55 211.8
Cco01g1113 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.5e-46 183.7
Cco07g1016 . 41 225 Type I MADS-box Gene Family AT1G77950 51.0 2.0e-41 166.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59649 PF00319 SRF-TF 4.90E-14 No_clan Cco TF