Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1018 ATGTCGGTCGCTAACGCCGACACATCTCTGACTGACGTCTCGACAGTCGAGAAAAGCAGCCCCGCGGAGAGGGCTGAGTGGGTGGCAAACCCACCAGAGCCGCCAGGGATATGGCGAGAGGTAATCGAGTCTCTCCGTGACACCATGTTTCCCGATCCGAACAAGCTTTCGTCCCTAAAGAACAAGACCGGAACTGCGGTGGTTGGAAGCCTCTTGCAGGGTGTGTTCCCTATCCTCTGCTGGGGACAGAGCTACAATCTGGGGAAGTTCAAGAATGACATCTTGGCTGGTTTGACCCTGGCTAGCCTCTGCATTCCCCAGAGTATTGGATATGCAAATCTGGCTAAACTTGATCCTCAATATGGGCTGTATACAAGCATTGTGCCACCGCTGGTTTATGCAGTGTTGGGAAGTTCGAGGGAAATAGCAATCGGACCGGTGGCCATAGTATCTCTACTTTTGCCGTCAATGATTCAGAAAATTCAAGATCCCGCCGCCAACCCTCTTGCCTACAAAAACCTTGTCTTCACCGTCACTTTCTTCGCCGGAATCTTTCAGGCCGCCTTTGGACTCTTTCGGCTGGGGTTTTTGGTGGATTTTCTGTCACATGCTGCCATAGTTGGGTTCATGGGTGGAGCTGCCATTGTAATTGGGCTTCAACAGCTCAAAGGATTGCTTGGCATCACTCACTTCACTAACAAAACTGACATTCTATCTGTTATGGAAGCTGTGTTTGGATCATTCCATCATCATAATGATCAATGGAATCCCTTCAACTTCATCATTGGCTCTTCATTCCTGTCCTTCATCCTCATCACCAAATTATTGGGGAAGAAGTACAAGAAAGTATTCTGGTTAGCTGCCATAGCTCCACTGTTGTGTGTAATCCTATCGACGCTTTTGGTGTTCCTCACAAGAGCCGACCGGCAGGGCGTGAAGATCGTCAAACGAGTCCCCGCCGGCCTGAACCCCATCTCGGCTCACCACATCCAAATCCACTCCCCTCACTTCTCCCAAATCCTCAACGCCGCCTTCATCGTGGCCGTCATAGCCCTCACGGAGGCCCTTGCTGTGGGGAGGTCACTGGCGTCCATGAAAGGTTACAACATTGATGGGAACAGAGAACTGGTTGCGTTAGGCTTCATGAACCTAGCCGGCTCTCTCACTTCTTGCTACGCAGCAACAGGTTCTCTGTCACGGTCGGCGGTTAATTTCGGTGCCGGGTGCGAGACCGCGGTTTCGAACGTGGTGATGGCTGTGACGGTGATGATATCATTGGAGATGTTCACCAAGCTCCTCTACTTCACTCCCAACGCCATTCTTGCTTCCATTATTCTATCTGCACTTCCAGGCCTTATTGATCTTCACAAAGCTTATAATATCTGGAAGATCGACAAGCTCGACTTCTTGGCTTGCCTTGCAGCTTTTCTTGGTGTTCTCTTTCTCTCCGTCGAATTCGGCCTCCTCCTTTCGTTAGTGATATCATTTGCAAAGATAATAGTAATGTCAATCAAACCTGGGACTGAGATATTGGGAAAACTCCCTGGAAGTGATACCTTCTGTGATATTCATCAATATCCAATGGCTCTCAATACTCCTGGAGTCCTCATCATCCGTGTTAAATCTGGCTTACTTTGCTTTGCAAATGCCAACTTCGTCAAAGATAGGATTCTGAGGTTCATCAGCAGCCAAGAAGATGCATCAGCAAAGAGAATCACTCACTTCCTAGTCATTGATCTCTCCAACTTAATGAACATTGACACTTCAGGAATTGCTTCTCTTGAAGAGCTGCAGAATAGTTTGGCAGCCAGTGGAATAGAGTTGGCCATTGCAAATCCAAAGTGGCAAGTGATTCACAAGCTAAAGGTAGCAAATTTTGTTGCCAAGCTCAAAGGGAGGGTGTTCTTGAGTGTTGGGGAAGCTGTGGATGCTTGCCTTACAGCTAAAATGGGAGCTATCTAA 1962 48.42 MSVANADTSLTDVSTVEKSSPAERAEWVANPPEPPGIWREVIESLRDTMFPDPNKLSSLKNKTGTAVVGSLLQGVFPILCWGQSYNLGKFKNDILAGLTLASLCIPQSIGYANLAKLDPQYGLYTSIVPPLVYAVLGSSREIAIGPVAIVSLLLPSMIQKIQDPAANPLAYKNLVFTVTFFAGIFQAAFGLFRLGFLVDFLSHAAIVGFMGGAAIVIGLQQLKGLLGITHFTNKTDILSVMEAVFGSFHHHNDQWNPFNFIIGSSFLSFILITKLLGKKYKKVFWLAAIAPLLCVILSTLLVFLTRADRQGVKIVKRVPAGLNPISAHHIQIHSPHFSQILNAAFIVAVIALTEALAVGRSLASMKGYNIDGNRELVALGFMNLAGSLTSCYAATGSLSRSAVNFGAGCETAVSNVVMAVTVMISLEMFTKLLYFTPNAILASIILSALPGLIDLHKAYNIWKIDKLDFLACLAAFLGVLFLSVEFGLLLSLVISFAKIIVMSIKPGTEILGKLPGSDTFCDIHQYPMALNTPGVLIIRVKSGLLCFANANFVKDRILRFISSQEDASAKRITHFLVIDLSNLMNIDTSGIASLEELQNSLAASGIELAIANPKWQVIHKLKVANFVAKLKGRVFLSVGEAVDACLTAKMGAI 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23292179 23300602 - CcPI632755_07g010180.1 Cco07g1018 183671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1018 653 FunFam Sulfate transporter 31 505 648 - -
Cco07g1018 653 Gene3D STAS domain 505 648 IPR036513 -
Cco07g1018 653 CDD STAS_SulP_like_sulfate_transporter 526 636 - -
Cco07g1018 653 ProSitePatterns SLC26A transporters signature. 119 140 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cco07g1018 653 Pfam STAS domain 526 641 IPR002645 -
Cco07g1018 653 NCBIfam sulfate permease 77 636 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1018 653 ProSiteProfiles STAS domain profile. 542 645 IPR002645 -
Cco07g1018 653 SUPERFAMILY SpoIIaa-like 532 645 IPR036513 -
Cco07g1018 653 MobiDBLite consensus disorder prediction 1 18 - -
Cco07g1018 653 MobiDBLite consensus disorder prediction 1 30 - -
Cco07g1018 653 PANTHER SULFATE TRANSPORTER 66 646 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco07g1018 653 Pfam Sulfate permease family 90 474 IPR011547 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1018 Cco-Chr7:23292179 Cco11g1584 Cco-Chr11:28730051 5.60E-181 dispersed
Cco07g1018 Cco-Chr7:23292179 Cco03g0908 Cco-Chr3:11328490 3.50E-223 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1018 K17469 - csv:101213063 1100.89