Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1034 ATGATGGTGGAGTTCCATGGAGAAATCCGAGACCCCAACGATGGTGAAGACCAAGAACATGAAGAACAAGAAGAGGAAATTAGCTACAATGATCTCAAGAAACGAATGTGGAAAGATCGACAAAGGTTGAAGAAGATGAAGGAGAAGCGTGATGATGAAGAGCCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCAATCCTCAAGTATATGGATAAGATCATGGAAGCTTGTAAGGCACAAGGGTTTGTTTATGGCATCGTCCCCGAAAAGGGTAAGCCCGTCACCGGCTCCTCCGAGAGCCTCCGTGAGTGGTGGCGGAATGACGTCCGATTCGAACAAGATGCTCCCATGGCCATAGCAAAATTCCTCCCCAAAGTAATCGAAGAATCAGAGCTCGATCCCAATTCGTTTTTGCACCTACTCACCGATTTACAGGACACAACATTAGGCTCCATTCTCTCTGCTCTGATGCAGCACTGTATTCCCCCGCAGAGGAAATTCCCACTGGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGTAACGAGCTTTGGTGGGGAGAACTGGGCCCCGCCGGTGGGCATGGTGTTCCGCCGTACAAAAAGCCCCACGACCTCAAAAAGGCTTGGAAAATCAGTGTCCTGGCGGCGGTGATCAAACACATGTCCCCTGATATGGACAACATGAGGAAATTAGTTCGGCAATCGAAGAATTTACAAGCAAAAATGACGGCAAAAGAGACGCTTACTTGGGCTAAGGTAGTGAATCAAGAAGAAGCCCTGTCACAATTAACCAAAAAAAAACTCAAAATCGCACCCGACGTAGAAGAAGAAGAAGAAGAAAAAGAACACGAGAAAAACAGAGGCGAACAGCGCACGGATGGAATTATGGAGAAGCGGAAGTGCATATTCGAAGAAGAAGCTGTAGCCGATTCGACACTGTACCCTTGCCAGAATCAATGGTGCCCACAGAGCGAGGTGCTGATGGGATTCATGGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATTTACAGAGGCGGGCAGACGGCGGAACAAGAACAATTCTCAGAGGAGCAGTCGATCGACACGCATTTGAAGAGCGTGGTGGATTGGATGAACTGGGAGTTATCAAGAGCAGAGCCGGGCAGCGACGAGGCAAGGATCGAAGATGCCGGAGACGGGTCAGGCAGCAGCACGGTGGAGGATTACTGGAATGGCGGCGCGGTGGAGGCGGCGTTTGAGATGCAGAGAAGGAGTATGGATTTGAATGCGAGTCCAGCGGAGGATTTGGGTGCCCAACAAGATGCCACTTCCATTTGGGATTTGAGATACGAATGGGCTGAGGAATGA 1386 50.29 MMVEFHGEIRDPNDGEDQEHEEQEEEISYNDLKKRMWKDRQRLKKMKEKRDDEEPESAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRNDVRFEQDAPMAIAKFLPKVIEESELDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGELGPAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDMDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEEALSQLTKKKLKIAPDVEEEEEEKEHEKNRGEQRTDGIMEKRKCIFEEEAVADSTLYPCQNQWCPQSEVLMGFMDKNARTEHETQCIYRGGQTAEQEQFSEEQSIDTHLKSVVDWMNWELSRAEPGSDEARIEDAGDGSGSSTVEDYWNGGAVEAAFEMQRRSMDLNASPAEDLGAQQDATSIWDLRYEWAEE 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23717204 23718589 + CcPI632755_07g010340.1 Cco07g1034 183687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1034 461 MobiDBLite consensus disorder prediction 44 67 - -
Cco07g1034 461 MobiDBLite consensus disorder prediction 391 412 - -
Cco07g1034 461 FunFam Ethylene insensitive 3-like 1 142 279 - -
Cco07g1034 461 MobiDBLite consensus disorder prediction 1 16 - -
Cco07g1034 461 Pfam Ethylene insensitive 3, DNA-binding domain 30 269 IPR047091 GO:0003700(InterPro)
Cco07g1034 461 SUPERFAMILY DNA-binding domain of EIN3-like 148 271 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco07g1034 461 Coils Coil 29 49 - -
Cco07g1034 461 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 382 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cco07g1034 461 MobiDBLite consensus disorder prediction 1 67 - -
Cco07g1034 461 Gene3D - 58 141 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco07g1034 461 Gene3D - 142 278 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco07g1034 461 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1034 Cco-Chr7:23717204 Cco08g1004 Cco-Chr8:21877756 4.50E-84 dispersed
Cco07g1034 Cco-Chr7:23717204 Cco07g1037 Cco-Chr7:23765035 1.00E-253 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59650 PF04873 EIN3 2.00E-110 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1034 K14514 - csv:116406094 707.983