Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1034 ATGATGGTGGAGTTCCATGGAGAAATCCGAGACCCCAACGATGGTGAAGACCAAGAACATGAAGAACAAGAAGAGGAAATTAGCTACAATGATCTCAAGAAACGAATGTGGAAAGATCGACAAAGGTTGAAGAAGATGAAGGAGAAGCGTGATGATGAAGAGCCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCAATCCTCAAGTATATGGATAAGATCATGGAAGCTTGTAAGGCACAAGGGTTTGTTTATGGCATCGTCCCCGAAAAGGGTAAGCCCGTCACCGGCTCCTCCGAGAGCCTCCGTGAGTGGTGGCGGAATGACGTCCGATTCGAACAAGATGCTCCCATGGCCATAGCAAAATTCCTCCCCAAAGTAATCGAAGAATCAGAGCTCGATCCCAATTCGTTTTTGCACCTACTCACCGATTTACAGGACACAACATTAGGCTCCATTCTCTCTGCTCTGATGCAGCACTGTATTCCCCCGCAGAGGAAATTCCCACTGGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGTAACGAGCTTTGGTGGGGAGAACTGGGCCCCGCCGGTGGGCATGGTGTTCCGCCGTACAAAAAGCCCCACGACCTCAAAAAGGCTTGGAAAATCAGTGTCCTGGCGGCGGTGATCAAACACATGTCCCCTGATATGGACAACATGAGGAAATTAGTTCGGCAATCGAAGAATTTACAAGCAAAAATGACGGCAAAAGAGACGCTTACTTGGGCTAAGGTAGTGAATCAAGAAGAAGCCCTGTCACAATTAACCAAAAAAAAACTCAAAATCGCACCCGACGTAGAAGAAGAAGAAGAAGAAAAAGAACACGAGAAAAACAGAGGCGAACAGCGCACGGATGGAATTATGGAGAAGCGGAAGTGCATATTCGAAGAAGAAGCTGTAGCCGATTCGACACTGTACCCTTGCCAGAATCAATGGTGCCCACAGAGCGAGGTGCTGATGGGATTCATGGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATTTACAGAGGCGGGCAGACGGCGGAACAAGAACAATTCTCAGAGGAGCAGTCGATCGACACGCATTTGAAGAGCGTGGTGGATTGGATGAACTGGGAGTTATCAAGAGCAGAGCCGGGCAGCGACGAGGCAAGGATCGAAGATGCCGGAGACGGGTCAGGCAGCAGCACGGTGGAGGATTACTGGAATGGCGGCGCGGTGGAGGCGGCGTTTGAGATGCAGAGAAGGAGTATGGATTTGAATGCGAGTCCAGCGGAGGATTTGGGTGCCCAACAAGATGCCACTTCCATTTGGGATTTGAGATACGAATGGGCTGAGGAATGA 1386 50.29 MMVEFHGEIRDPNDGEDQEHEEQEEEISYNDLKKRMWKDRQRLKKMKEKRDDEEPESAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRNDVRFEQDAPMAIAKFLPKVIEESELDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGELGPAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDMDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEEALSQLTKKKLKIAPDVEEEEEEKEHEKNRGEQRTDGIMEKRKCIFEEEAVADSTLYPCQNQWCPQSEVLMGFMDKNARTEHETQCIYRGGQTAEQEQFSEEQSIDTHLKSVVDWMNWELSRAEPGSDEARIEDAGDGSGSSTVEDYWNGGAVEAAFEMQRRSMDLNASPAEDLGAQQDATSIWDLRYEWAEE 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 23717204 23718589 + CcPI632755_07g010340.1 Cco07g1034 183687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1034 461 MobiDBLite consensus disorder prediction 44 67 - -
Cco07g1034 461 MobiDBLite consensus disorder prediction 391 412 - -
Cco07g1034 461 FunFam Ethylene insensitive 3-like 1 142 279 - -
Cco07g1034 461 MobiDBLite consensus disorder prediction 1 16 - -
Cco07g1034 461 Pfam Ethylene insensitive 3, DNA-binding domain 30 269 IPR047091 GO:0003700(InterPro)
Cco07g1034 461 SUPERFAMILY DNA-binding domain of EIN3-like 148 271 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco07g1034 461 Coils Coil 29 49 - -
Cco07g1034 461 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 382 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cco07g1034 461 MobiDBLite consensus disorder prediction 1 67 - -
Cco07g1034 461 Gene3D - 58 141 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco07g1034 461 Gene3D - 142 278 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco07g1034 461 MobiDBLite consensus disorder prediction 283 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1034 K14514 - - csv:116406094 707.983
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1034 Cco-Chr7:23717204 Cco08g1004 Cco-Chr8:21877756 4.50E-84 dispersed
Cco07g1034 Cco-Chr7:23717204 Cco07g1037 Cco-Chr7:23765035 1.00E-253 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco03g1460 . 2 624 EIL Transcription Factor Family AT2G27050 58.4 9.1e-191 663.7
Cco08g1004 . 8 495 EIL Transcription Factor Family AT2G27050 62.8 1.4e-167 586.6
Cco03g1385 . 44 326 EIL Transcription Factor Family AT2G27050 62.2 3.8e-96 349.4
Cco03g1385 . 44 578 EIL Transcription Factor Family AT1G73730 55.6 2.0e-147 519.6
Cco03g1460 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.3e-105 378.3
Cco08g1004 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.3e-103 373.2
Cco07g1034 . 24 273 EIL Transcription Factor Family AT1G73730 55.6 1.6e-75 280.8
Cco07g1037 . 24 273 EIL Transcription Factor Family AT1G73730 55.6 1.6e-75 280.8
Cco03g1460 . 3 624 EIL Transcription Factor Family AT3G20770 62.6 3.8e-211 731.5
Cco08g1004 . 7 493 EIL Transcription Factor Family AT3G20770 63.7 2.3e-171 599.4
Cco03g1385 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.5e-98 357.5
Cco03g1385 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.6e-70 263.5
Cco07g1034 . 21 364 EIL Transcription Factor Family AT5G10120 54.6 2.3e-99 359.8
Cco07g1037 . 21 364 EIL Transcription Factor Family AT5G10120 54.6 2.3e-99 359.8
Cco03g1385 . 44 290 EIL Transcription Factor Family AT5G10120 54.8 6.2e-73 271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59650 PF04873 EIN3 2.00E-110 No_clan Cco TF